Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq146 96.9 2e-15 seq128 87.8 1e-12 seq8 86.0 4e-12 >seq146 Length=1436832 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || | ||||| || |||||| |||| || ||||| | Sbjct 47923 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGTTCT 47982 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||||| |||||||||||| |||| || | Sbjct 47983 GACACCATTGACAAT--GTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACC 48040 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||||||||| || | || |||| || | | | | ||||||| Sbjct 48041 AGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGGACCCTTGCTGATTACA 48100 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| ||||| | ||||| || Sbjct 48101 ACATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGTGGTGG 48149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || ||||| || || || | || || |||||| | Sbjct 47239 ATGCAGATCTTTGTCAAAACCCTCACTGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 47298 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || || ||||| ||||| ||||| |||| || | Sbjct 47299 GACACCATTGACAAC--GTTAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACC 47356 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||| || ||| | || |||| || | | | | ||||||| Sbjct 47357 AGCAAAGGCTGATCTTTGCCGGCAAGCAACTTGAAGACGGCCGGACCCTCGCTGATTACA 47416 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||| |||| | || ||||| | ||| | ||||| || Sbjct 47417 ACATTCAAAAAGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGG 47465 >seq128 Length=1543362 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG--CA 27847 |||||||||||||| || ||| | |||||||| |||||| | || || || || || Sbjct 1025208 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 1025149 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || |||| |||||| ||| || ||||| || ||| |||| || | Sbjct 1025148 GATACCATTGACAA--CGTCAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACC 1025091 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || ||||| || |||||| | || |||| | | | | || || | Sbjct 1025090 AGCAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTAGCAGACTATA 1025031 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | |||||||| ||||||||| | || || Sbjct 1025030 ACATCCAGAAGGAGTCAACTCTCCATTTGGTGTTGCGTTTGAGAGGAGG 1024982 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||||| || || || ||| || |||| ||||| ||| | Sbjct 1026121 AATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTC 1026062 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| |||||| ||||| ||||| |||||| |||| || Sbjct 1026061 AGACACCATTGATAAT--GTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGAC 1026004 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| || | || ||||| || ||||| | || || | || | |||| | ||||| Sbjct 1026003 CAGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTG-CTGATTA 1025945 Query 27966 CAACATCCAAAAAGAGAGCACT 27987 |||||||||||| ||| |||| Sbjct 1025944 CAACATCCAAAAGGAGTCCACT 1025923 >seq8 Length=4063183 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | |||||||| ||||| |||| || || ||| | Sbjct 1948518 ATGCAGATCTTTGTGAAAACCTTGACTGGGAAGACAATTACTCTTGAGGTTGAGAGCTCT 1948577 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| |||||| || || ||||| |||| || | Sbjct 1948578 GACACTATTGACAAT--GTCAAGGCAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATC 1948635 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || |||||||| ||||| ||||| || | | | | | | || |||| Sbjct 1948636 AGCAGAGATTGATCTTTGCCGGTAAACAGTTGGAGGATGGAAGAACTCTAGCTGACTACA 1948695 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| ||| ||| | || | || | ||| ||||||| ||| Sbjct 1948696 ACATCCAAAAGGAGTCCACACTCCACCTTGTCCTTCGTCTGCGTGGTGGC 1948745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355797977117658