Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq146 111 1e-19 seq128 102 7e-17 seq8 102 7e-17 seq104 87.8 2e-12 seq125 82.4 7e-11 >seq146 Length=1436832 Score = 111 bits (122), Expect = 1e-19 Identities = 159/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| || || ||||| |||||||| || || || |||| || Sbjct 47220 CACCAAGTGGAGAGTTGACTCCTTCTGAATATTGTAATCGGCTAGAGTACGGCCGTCTTC 47161 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| ||||| || || | ||||||||| | ||| | || || |||||| Sbjct 47160 AAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTG 47101 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCG-TATC---GCTCGACTCCACGTCCACCGTGATAC 39250 ||| || ||| | ||| | || | | || ||| ||||| || | |||||| Sbjct 47100 GATCTTGGCTTTAA-CGTTGTCAATGGTGTCTGAGCTT---TCCACCTCAAGGGTGATAG 47045 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | ||||| || || ||||| |||||||||||||||| ||| Sbjct 47044 TCTTTCCAGTGAGGGTTTTGACAAAGATTTGCATCTGTAC 47005 >seq128 Length=1543362 Score = 102 bits (112), Expect = 7e-17 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || ||||| ||||||||||| | || ||||||||| Sbjct 1025918 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 1025977 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || || | ||||||||| | ||| | | || ||||| ||||| Sbjct 1025978 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 1026037 Query 39202 TGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 ||||| | | | || || ||| ||| || || | || ||| | ||||| Sbjct 1026038 GCTTTGACATTATCAATGGTGTCTGAGCT---CTCGACCTCAAGAGTTATAGTCTTTCCG 1026094 Query 39259 GTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||||||||||||||||||| Sbjct 1026095 GTCAGAGTTTTAACAAAGATTTGCAT 1026120 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || ||||||||||| || || ||| || || || ||||| || || Sbjct 1024982 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCT 1025041 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | |||| ||||| ||||| || ||||| || | |||||||||||| | ||| Sbjct 1025042 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1025101 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | | ||| |||| | ||| | | || ||||| ||| | | | ||||| ||| | Sbjct 1025102 ATACCCTCCTTGT-CTTGAATCTTTGCTTTGA-CGTTGTCAATGGTATCTGAACTCTCAA 1025159 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| || || | || || |||| || || ||||| |||||||| Sbjct 1025160 CCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1025208 >seq8 Length=4063183 Score = 102 bits (112), Expect = 7e-17 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || | ||||||||| || ||| |||||| || ||||| ||||| ||| Sbjct 1949428 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCA 1949369 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || | | || |||||||| ||||| ||||| || | |||||||||||| ||||| Sbjct 1949368 AGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 1949309 Query 39177 CACGCTCTCTTTGTC 39191 | || |||||||| Sbjct 1949308 ATCCCT-TCTTTGTC 1949295 >seq104 Length=1719749 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || || || || |||||||| || || | || || Sbjct 292596 CACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTC 292537 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || | |||||||||||| | ||| | | || |||||| Sbjct 292536 AAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTG 292477 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| | | | || ||| ||||| || || | ||||| | || Sbjct 292476 GATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTT 292417 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 292416 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 292384 >seq125 Length=1558646 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| || ||||| || | || ||||||||||| || ||||| | Sbjct 17295 CTTTTTGGATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGA 17354 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | || |||||||||| |||||| Sbjct 17355 TCAGTCGCTGCTGGTCCGGTGG 17376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429467838017702