Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4 123 2e-23 >seq4 Length=4469570 Score = 123 bits (136), Expect = 2e-23 Identities = 379/581 (65%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||||||||||||||| ||||||||||||||||| ||| | || || || || ||| Sbjct 3869077 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 3869018 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAA 4662 ||||| |||||||| || | ||||| | ||||||||| | | | | | | | | | Sbjct 3869017 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTG--A 3868960 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG- 4721 |||| || ||||| || ||||| || || || || | |||| || || | Sbjct 3868959 AGAAAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAA------GGTTTCGG 3868906 Query 4722 --TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATA 4779 | | ||||| | ||||| || || || || | ||| || || || || | | Sbjct 3868905 AACCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGA 3868846 Query 4780 TAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839 | || || ||||| || ||||| | || | || || | || | || | | Sbjct 3868845 TTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAAC 3868786 Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCT 4898 | ||||| || ||||| ||||| || || || || || || || || |||||| | || Sbjct 3868785 TGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGCGCC 3868727 Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 || | || || || || || || ||| | | | ||| || || || ||||| Sbjct 3868726 TCAGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCT 3868667 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTT 5018 ||| ||||| || || | ||||||| || || | ||| | | | || ||| Sbjct 3868666 GAGGCGGCAAAGAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTT 3868607 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 | |||||| | ||| || || ||| |||||||| || ||||| || || || Sbjct 3868606 TCCCAGTGACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATG 3868547 Query 5079 GCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 ||||| |||||||| |||||| | ||||||||||| || Sbjct 3868546 GCTTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGG 3868506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426972289876382