Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4 179 4e-40 >seq4 Length=4469570 Score = 179 bits (198), Expect = 4e-40 Identities = 581/892 (65%), Gaps = 25/892 (3%) Strand=Plus/Minus Query 23218 TTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276 || ||||| |||||||| | |||| || || ||||| ||||| || | || || Sbjct 3869365 TTCTGATACTCCCCAACTC-TCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAG 3869307 Query 23277 TTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTTT 23334 ||||| ||||||||||||| || ||| || || ||| ||| | || | | Sbjct 3869306 CTCCATCCAATCAAATGGATTCTGAGCATTGTA--CATCTTGTCATAACCCAAAGCATCC 3869249 Query 23335 AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATT 23394 || | ||||| || |||||||| || |||| || ||||||||| || || || | Sbjct 3869248 AACAATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACC 3869189 Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454 || |||| |||||| | | ||| |||| || ||||||||| ||| Sbjct 3869188 AGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATA 3869129 Query 23455 ATTTGAACAATAACT---TCTTCACT-AGGTGGATATTTTAAATACTTAAACAATAAACA 23510 ||| | | ||| || ||| | || | | || | ||| || | ||||| Sbjct 3869128 ATTC---CCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAA-AGCAAACA 3869073 Query 23511 TGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCC 23570 ||||||||||| || | ||||| || || ||| || ||||| || || |||||||| Sbjct 3869072 CGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCC 3869013 Query 23571 TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAAT 23630 |||||||| || |||||||| | ||||||||| | | || |||| |||||||| Sbjct 3869012 AGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAAT 3868953 Query 23631 ACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAAT 23690 || |||||| ||||| ||||| | || | || ||| | | ||| || Sbjct 3868952 CCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAGGTTTCGGAACCATCG---AT 3868896 Query 23691 CCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAA 23750 ||| | ||| || |||||| || ||||| || || || ||||| | Sbjct 3868895 CCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGC----AC 3868840 Query 23751 GAGAAAAGTT----TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806 | | || || ||||| ||| ||| |||| || | || | || ||||| |||| Sbjct 3868839 GGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACA 3868780 Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866 | || ||||| ||||| ||||| || || || |||||||| ||| | || |||| | Sbjct 3868779 TCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAA 3868720 Query 23867 ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAG 23926 || ||||| || | || ||| ||| | || || ||| || || || || | Sbjct 3868719 CCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGG 3868660 Query 23927 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAAT 23986 ||||||| ||||| |||| | || |||||||||||| | | || || |||| ||| | Sbjct 3868659 CAAAGAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGT 3868600 Query 23987 CATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCT 24046 | | |||| |||| ||| ||||| || || ||||| ||| ||||| ||| || Sbjct 3868599 GACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCT 3868540 Query 24047 TATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098 | |||||| |||||| | || || ||||| || || ||||| ||| Sbjct 3868539 TGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATC 3868488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521391172715600