Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq66 187 3e-42 seq40 178 2e-39 >seq66 Length=1001823 Score = 187 bits (206), Expect = 3e-42 Identities = 510/774 (66%), Gaps = 19/774 (2%) Strand=Plus/Minus Query 23967 CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 24026 ||||||||||||||||| ||||| |||||| ||||| ||||| |||| || || Sbjct 953270 CTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACCAGCTTT 953211 Query 24027 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 24086 || || || | | || | ||||| | || || | ||||| ||| || || || Sbjct 953210 ACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACGATTGAC 953151 Query 24087 CTTACTGTTTCTTCACTCGGTGGATAC---AATAAA-TGTTTAAACATCAAACATGCGAA 24142 ||| | || |||| || | | || || ||| ||| ||| || ||||| Sbjct 953150 TGGACTTTCTCCACACTTAGTTTCTTCTTCAACAAGCTGT----ACAGCAAGCAGGCGAA 953095 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 || ||||| || || ||||||| || | ||||| || || || | ||||||||| Sbjct 953094 GTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAATCCGGGCAT 953035 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTT 24261 || || |||||||| ||||| |||||||| ||| || ||| || ||||| || |||| Sbjct 953034 TAACCCGCGCTTTTTGAGCCAGAATATGGA-GCAGAAACTTCCGGAGAAGAAGATCCCTT 952976 Query 24262 CTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCATGTATCCACT 24318 | || || || ||||| || || || || | | | |||| |||| ||||| Sbjct 952975 CAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCGCCGTCA---ATCCATC 952919 Query 24319 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 24378 | ||||| || || ||||| || || || || || ||||| || || ||||| | Sbjct 952918 GGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATTGCTCGGAAGAGGT 952859 Query 24379 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 24438 | ||| | ||||| | || || || | | ||| |||||||| || | Sbjct 952858 GGGATTTAAGCTCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAGTACATTTCGGAGT 952799 Query 24439 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 24498 | |||||||| || || ||||| || |||||||| | ||||| | || ||| || | Sbjct 952798 GGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCTCAGCAACCTGGACCT 952739 Query 24499 CTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558 || | |||| | || | |||||| ||||| ||||| ||| || || || | Sbjct 952738 CTTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGGAGGCGGCGAAGAAGG 952679 Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAATCATTGA 24615 | | | ||| | ||||| | || ||||| | || || | | ||||| | | Sbjct 952678 CGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGGTTTCCCAATGACGGT 952619 Query 24616 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 24675 | |||| || | || ||||||||| ||||||| || || || || ||||| || |||| Sbjct 952618 TGTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTTCAGCCTTCTTGTACA 952559 Query 24676 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 | | |||||| | | |||| ||||| || ||| ||||||| ||| |||| Sbjct 952558 TCTCCCAGATTTGTGGGTATTTGATTGGGAACATACAGAATCTATCTGGGTTTT 952505 >seq40 Length=1826671 Score = 178 bits (196), Expect = 2e-39 Identities = 408/610 (67%), Gaps = 11/610 (2%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || || ||||| ||||| || || || || | || || ||||| || | Sbjct 1766796 ACAGCAAGCAGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGA 1766737 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 | || | ||||||||||| || |||||||| ||||| |||||||| ||| | | | ||| Sbjct 1766736 AGGTTAATCCGGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGA-GCAGAAGCTTCCA 1766678 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCG 24302 || |||||||| ||||| || || || |||||||||||||| | | | || Sbjct 1766677 GAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCT 1766618 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||| ||||| | |||||||| || ||||| || ||||| || || ||||| Sbjct 1766617 CCGTCG---ATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCG 1766561 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || || ||||| | | ||| | ||||| | || || || | | || Sbjct 1766560 ATTGCGCGGAAGAGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGG 1766501 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 |||||||||||| || |||||||||||||| ||||| || |||||||| | ||| Sbjct 1766500 GAATACATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCC 1766441 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 || | | ||| || ||| | |||| | | || | |||||| || || |||||| Sbjct 1766440 TCTGCTACCTGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCA 1766381 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---T 24599 ||| || || || || | | || | || || | || ||||| | || || Sbjct 1766380 GAGGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATG 1766321 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 || | ||| | | | || | || | ||| ||||||||| | ||||| || || || Sbjct 1766320 TTTTCCCAGTGGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCT 1766261 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 || || || || ||||| | |||||| | |||||| ||||| || ||| |||||| Sbjct 1766260 TCAGCTTTCTTGTACATTTCCCAGATTTGTGGATATTTGATTGGGAACATACAGAATCTA 1766201 Query 24720 TTTGGATTTT 24729 | ||| |||| Sbjct 1766200 TCTGGGTTTT 1766191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593140777001760