Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq329 100 2e-16 seq37 93.3 4e-14 seq865 89.7 4e-13 seq810 86.0 5e-12 seq20 84.2 2e-11 seq1435 82.4 7e-11 >seq329 Length=298387 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || ||| | || || || || ||||| ||| |||| || Sbjct 180313 ATGCAAATCTTTGTGAAGACACTTACTGGAAAGACGATTACTTTGGAAGTGGAAAGTTCA 180372 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || ||| |||||||| ||| | || |||||| Sbjct 180373 GATACAATTGATAATGTTAAGACTAAGATTCAGGATAAAGAGGGTATCCCACCAGATCAG 180432 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || |||||||||| || || ||| |||| ||| | |||| |||| ||||| ||| Sbjct 180433 CAGAGGATTATCTTTGCTGGGAAGCAATTGGAGGATGGGAGAACTTTGGCAGATTATAAT 180492 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 ||||||||||| ||||||||||| Sbjct 180493 ATTCAGAAGGAGTCTACTCTTCA 180515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGT-GTGCCCGTAGATCAACAAAGACTTATC 29093 || ||||| || ||| ||||||||||||| ||| | | |||||||||||||| ||| Sbjct 180158 ATGTTAAGACCAAGATTCACGATAAAGAAGGTATTGCACCT-GATCAACAAAGACTCATC 180216 Query 29094 TTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAA 29153 ||||| || ||||| | || ||| | |||| | || || || |||||||| ||||| Sbjct 180217 TTTGCTGGGAAACAGTTAGAGGATGGTAGAACTCTTGCAGACTATAATATTCAAAAGGAG 180276 Query 29154 TCTACTCTTCACATGGTGTTACGATTACGAGGAggg 29189 |||||||| || |||| | || || |||| ||| Sbjct 180277 TCTACTCTGCATTTGGTACTTCGTTTGAGAGGTGGG 180312 >seq37 Length=1785839 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| ||||||| | || || |||||||| ||| ||| ||| || Sbjct 885699 AAAATGCAGATCTTCGTCAAAACCCTAACCGGAAAAACCATAACCCTAGAAGTAGAATCC 885758 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | | | || || || || |||||||| | || || Sbjct 885759 TCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGAC 885818 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| | || ||||| || || ||||| |||||||| | ||| | ||||| ||| Sbjct 885819 CAACAACGCCTCATCTTCGCCGGAAAACAGTTGGAAGATGGAAGAACACTTGCCGACTAC 885878 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAggg 29189 || || ||||||||||||||||| ||| ||||| | || | || || ||| Sbjct 885879 AACATCCAGAAGGAATCTACTCTCCACTTGGTGCTTCGTCTTCGTGGTGGG 885929 >seq865 Length=406355 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104 ||||||| ||||| || || | ||| ||| || |||||||||||||| || || || Sbjct 6930 AAAAATTCAAGATAAGGAGGGCATTCCCCCAGACCAGCAAAGACTTATCTTCGCCGGAAA 6871 Query 29105 ACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||||| |||||| | ||| | ||||| ||||| || ||||||||||| ||||| || Sbjct 6870 GCAACTTGAAGATGGCCGAACCCTTGCCGACTACAACATCCAGAAGGAATCAACTCTCCA 6811 Query 29165 CATGGTG 29171 | | ||| Sbjct 6810 CCTTGTG 6804 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104 ||||||| ||||| || || | ||| ||| || |||||||||||||| || || || Sbjct 7225 AAAAATTCAAGATAAGGAGGGCATTCCCCCAGACCAGCAAAGACTTATCTTCGCCGGAAA 7166 Query 29105 ACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||||| |||||| | ||| | ||||| ||||| || ||||||||||| ||||| || Sbjct 7165 GCAACTTGAAGATGGCCGAACCCTTGCCGACTACAACATCCAGAAGGAATCAACTCTCCA 7106 Query 29165 CATGGTG 29171 | | ||| Sbjct 7105 CCTTGTG 7099 >seq810 Length=562993 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | ||||| | || || |||||||| ||| |||| ||| | Sbjct 115989 AATGCAGATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCCTCGAAGTCGAAAGTTC 115930 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | | ||| ||||| ||||| || ||| | ||| ||| || Sbjct 115929 CGACACCATTGACAACGTCAAGGCTAAAATCCAAGATAAGGAGGGTATTCCCCCAGACCA 115870 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| || ||||| || || ||||| || || ||| | |||| | ||||||||||| Sbjct 115869 GCAAAGGCTGATCTTCGCCGGAAAACAGCTCGAGGATGGCCGAACTCTTGCCGATTACAA 115810 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 || |||||||| || ||||| ||| Sbjct 115809 CATCCAGAAGGAGTCAACTCTCCAC 115785 >seq20 Length=1286389 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | ||||| | ||||| |||||||| ||| || ||| | Sbjct 250333 AAAAATGCAGATTTTCGTGAAAACCCTAACGGGGAAAACCATAACCCTAGAGGTTGAATC 250392 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || || | | | || | ||| || || ||||| ||||| | || ||| Sbjct 250393 CTCCGATACCATTGACAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATCCCTCCAGA 250452 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 || || | || ||||| || || || || || ||||| | ||| | ||||| || Sbjct 250453 CCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGAACCCTAGCCGACTA 250512 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| || ||||||||||| ||||||||| ||||| Sbjct 250513 CAACATCCAGAAGGAATCAACTCTTCACCTGGTG 250546 >seq1435 Length=543809 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 28955 TGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA 29014 ||| | ||||||||| ||| | ||||| | || || |||||||| ||| ||| ||| Sbjct 91720 TGTCACAATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGA 91779 Query 29015 ACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGT 29074 | || | || || | | | | | || || || || ||||| || | || Sbjct 91780 ATCCTCCGATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACC 91839 Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 || || ||| | || ||||| || || || ||| | || ||| | ||| | ||||| Sbjct 91840 GGACCAGCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGA 91899 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAggg 29189 |||||| |||||||||||||| || |||||| ||||| | || | || || ||| Sbjct 91900 TTACAACATTCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTCGTGGTGGG 91954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427927445359610