Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq329 100 2e-16
seq37 93.3 4e-14
seq865 89.7 4e-13
seq810 86.0 5e-12
seq20 84.2 2e-11
seq1435 82.4 7e-11
>seq329
Length=298387
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| || | || ||| | || || || || ||||| ||| |||| ||
Sbjct 180313 ATGCAAATCTTTGTGAAGACACTTACTGGAAAGACGATTACTTTGGAAGTGGAAAGTTCA 180372
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || ||||| || ||| |||||||| ||| | || ||||||
Sbjct 180373 GATACAATTGATAATGTTAAGACTAAGATTCAGGATAAAGAGGGTATCCCACCAGATCAG 180432
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| || |||||||||| || || ||| |||| ||| | |||| |||| ||||| |||
Sbjct 180433 CAGAGGATTATCTTTGCTGGGAAGCAATTGGAGGATGGGAGAACTTTGGCAGATTATAAT 180492
Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164
||||||||||| |||||||||||
Sbjct 180493 ATTCAGAAGGAGTCTACTCTTCA 180515
Score = 95.1 bits (104), Expect = 1e-14
Identities = 116/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGT-GTGCCCGTAGATCAACAAAGACTTATC 29093
|| ||||| || ||| ||||||||||||| ||| | | |||||||||||||| |||
Sbjct 180158 ATGTTAAGACCAAGATTCACGATAAAGAAGGTATTGCACCT-GATCAACAAAGACTCATC 180216
Query 29094 TTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAA 29153
||||| || ||||| | || ||| | |||| | || || || |||||||| |||||
Sbjct 180217 TTTGCTGGGAAACAGTTAGAGGATGGTAGAACTCTTGCAGACTATAATATTCAAAAGGAG 180276
Query 29154 TCTACTCTTCACATGGTGTTACGATTACGAGGAggg 29189
|||||||| || |||| | || || |||| |||
Sbjct 180277 TCTACTCTGCATTTGGTACTTCGTTTGAGAGGTGGG 180312
>seq37
Length=1785839
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| ||||||| | || || |||||||| ||| ||| ||| ||
Sbjct 885699 AAAATGCAGATCTTCGTCAAAACCCTAACCGGAAAAACCATAACCCTAGAAGTAGAATCC 885758
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || || | | | | | || || || || |||||||| | || ||
Sbjct 885759 TCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGAC 885818
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|||||| | || ||||| || || ||||| |||||||| | ||| | ||||| |||
Sbjct 885819 CAACAACGCCTCATCTTCGCCGGAAAACAGTTGGAAGATGGAAGAACACTTGCCGACTAC 885878
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAggg 29189
|| || ||||||||||||||||| ||| ||||| | || | || || |||
Sbjct 885879 AACATCCAGAAGGAATCTACTCTCCACTTGGTGCTTCGTCTTCGTGGTGGG 885929
>seq865
Length=406355
Score = 89.7 bits (98), Expect = 4e-13
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104
||||||| ||||| || || | ||| ||| || |||||||||||||| || || ||
Sbjct 6930 AAAAATTCAAGATAAGGAGGGCATTCCCCCAGACCAGCAAAGACTTATCTTCGCCGGAAA 6871
Query 29105 ACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||||| |||||| | ||| | ||||| ||||| || ||||||||||| ||||| ||
Sbjct 6870 GCAACTTGAAGATGGCCGAACCCTTGCCGACTACAACATCCAGAAGGAATCAACTCTCCA 6811
Query 29165 CATGGTG 29171
| | |||
Sbjct 6810 CCTTGTG 6804
Score = 89.7 bits (98), Expect = 4e-13
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104
||||||| ||||| || || | ||| ||| || |||||||||||||| || || ||
Sbjct 7225 AAAAATTCAAGATAAGGAGGGCATTCCCCCAGACCAGCAAAGACTTATCTTCGCCGGAAA 7166
Query 29105 ACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||||| |||||| | ||| | ||||| ||||| || ||||||||||| ||||| ||
Sbjct 7165 GCAACTTGAAGATGGCCGAACCCTTGCCGACTACAACATCCAGAAGGAATCAACTCTCCA 7106
Query 29165 CATGGTG 29171
| | |||
Sbjct 7105 CCTTGTG 7099
>seq810
Length=562993
Score = 86.0 bits (94), Expect = 5e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || ||| | ||||| | || || |||||||| ||| |||| ||| |
Sbjct 115989 AATGCAGATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCCTCGAAGTCGAAAGTTC 115930
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | | | | ||| ||||| ||||| || ||| | ||| ||| ||
Sbjct 115929 CGACACCATTGACAACGTCAAGGCTAAAATCCAAGATAAGGAGGGTATTCCCCCAGACCA 115870
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
||||| || ||||| || || ||||| || || ||| | |||| | |||||||||||
Sbjct 115869 GCAAAGGCTGATCTTCGCCGGAAAACAGCTCGAGGATGGCCGAACTCTTGCCGATTACAA 115810
Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165
|| |||||||| || ||||| |||
Sbjct 115809 CATCCAGAAGGAGTCAACTCTCCAC 115785
>seq20
Length=1286389
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017
||||||||| || ||| | ||||| | ||||| |||||||| ||| || ||| |
Sbjct 250333 AAAAATGCAGATTTTCGTGAAAACCCTAACGGGGAAAACCATAACCCTAGAGGTTGAATC 250392
Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077
| | || || | | | || | ||| || || ||||| ||||| | || |||
Sbjct 250393 CTCCGATACCATTGACAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATCCCTCCAGA 250452
Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137
|| || | || ||||| || || || || || ||||| | ||| | ||||| ||
Sbjct 250453 CCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGAACCCTAGCCGACTA 250512
Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171
||| || ||||||||||| ||||||||| |||||
Sbjct 250513 CAACATCCAGAAGGAATCAACTCTTCACCTGGTG 250546
>seq1435
Length=543809
Score = 82.4 bits (90), Expect = 7e-11
Identities = 159/235 (68%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 28955 TGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA 29014
||| | ||||||||| ||| | ||||| | || || |||||||| ||| ||| |||
Sbjct 91720 TGTCACAATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGA 91779
Query 29015 ACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGT 29074
| || | || || | | | | | || || || || ||||| || | ||
Sbjct 91780 ATCCTCCGATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACC 91839
Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134
|| || ||| | || ||||| || || || ||| | || ||| | ||| | |||||
Sbjct 91840 GGACCAGCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGA 91899
Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAggg 29189
|||||| |||||||||||||| || |||||| ||||| | || | || || |||
Sbjct 91900 TTACAACATTCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTCGTGGTGGG 91954
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427927445359610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |