Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1663 109 5e-19 seq865 104 2e-17 seq810 98.7 8e-16 seq909 96.9 3e-15 >seq1663 Length=237253 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| || || || | |||| || |||||||| || Sbjct 10407 GTAGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCG 10348 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | ||||| | ||||||||| ||| | |||||||||||| |||||| |||| Sbjct 10347 GCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTC 10288 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || ||| || || || | ||| ||||| || ||||||| ||| Sbjct 10287 ACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTT 10228 Query 21159 TTGACAAATATTTGCATTTT 21178 || || || || |||||||| Sbjct 10227 TTCACGAAGATCTGCATTTT 10208 >seq865 Length=406355 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||| | || |||||||| || ||||| ||||| ||| Sbjct 6103 CCACCACGAAGACGGAGAACCAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 6162 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || || ||||| ||||| ||| |||| | ||||||||||| ||| Sbjct 6163 AAAGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGG 6222 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| || || | | | | || || ||| Sbjct 6223 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACC 6282 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||| |||||||| || || |||||||| || || ||||| Sbjct 6283 TCCAAGGTAATAGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 6329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||| | || | || ||||| || || ||||| ||||| || ||||| || |||| Sbjct 7421 GAGCACAAGGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTC 7480 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||| |||||||| || || | || || ||||||||||| ||| | || ||||| || Sbjct 7481 CTCGAGCTGTTTCCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATC 7540 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||| || | | ||| || || ||| || | || ||||| Sbjct 7541 TTGGATCTTAGCTTTGACGTTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATGGT 7600 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| | ||||| || || |||||||| Sbjct 7601 CTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 7633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| |||||||| || || |||| ||| | | ||||| || ||||| || Sbjct 5677 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATCCTCAAGTTGTTTCCCA 5736 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | ||||||||||| ||| | || |||||||| |||||| ||| Sbjct 5737 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTC 5796 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||| |||| ||| |||||||| || || || || Sbjct 5797 ACATTATCAATCGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTACCAGTCAAGGTC 5856 Query 21159 TTGACAAATATTTGCATT 21176 || ||||| || |||||| Sbjct 5857 TTCACAAAAATCTGCATT 5874 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||||| ||| | ||||| ||||| || ||||| ||||| |||| || || | || Sbjct 6345 GAGCACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATC 6404 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || ||||| || || ||| | || | ||||||||||| ||| | |||||||| || Sbjct 6405 TTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTATC 6464 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||| || || || | | | | ||| || | |||| |||| ||| ||||| Sbjct 6465 TTGGATTTTGGCCTTTACGTTGTCAATAGTGTCGGAGCTCTCCACCTCCAAGGTGATGGT 6524 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || || | || || ||||| || ||||| Sbjct 6525 CTTTCCTGTAAGAGTCTTAACAAAAATCTGCAT 6557 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||||||||||| || ||||| ||||| || |||||| || | || Sbjct 6574 AGGACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCATCT 6633 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | || | ||||||||||| ||| | |||||||| || Sbjct 6634 TCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTATCT 6693 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | | || || | || || | ||| |||||| Sbjct 6694 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTC 6753 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || |||| || || ||||| || ||||| Sbjct 6754 TTCCCTGTTAGAGTCTTCACAAAGATCTGCAT 6785 >seq810 Length=562993 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || ||||||||||| || Sbjct 115534 CCACCACGCAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCG 115593 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | ||||| ||||| || || ||| | || | ||||||||||| ||| Sbjct 115594 AGGGTTCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 115653 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| ||||| | | | | || || | || Sbjct 115654 ATACCCTCCTTATCTTGGATCTTAGCCTTCACGTTGTCAATTGTGTCGGAGCTTTCAACC 115713 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||||||||| || || | || || ||||| || ||||| Sbjct 115714 TCCAGGGTAATGGTCTTTCCCGTAAGAGTCTTCACAAAGATCTGCAT 115760 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| |||||||| || || |||| ||| | | ||||| || || || || Sbjct 114880 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACGCCCATCCTCAAGTTGCTTCCCA 114939 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||||||| ||| | || |||||||| |||||| || Sbjct 114940 GCAAAGATCAATCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTA 114999 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | |||||| | |||| || | ||| |||||||| ||||| || || Sbjct 115000 ACATTATCAATCGTATCAGAGCTCTCCACCTCTAGGGTGATGGTCTTTCCGGTCAAGGTC 115059 Query 21159 TTGACAAATATTTGCATT 21176 || ||||| || |||||| Sbjct 115060 TTCACAAAAATCTGCATT 115077 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||||| || | || |||||||| || ||||| ||||| |||| || || | || Sbjct 115320 GAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATC 115379 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||| || || || ||||| |||| | ||||||||||| ||| | || ||||| || Sbjct 115380 CTCAAGTTGCTTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATC 115439 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 || ||| || || | | | | || || | |||| || | ||| ||||| Sbjct 115440 CTGAATTTTTGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCTAAGGTGATGGT 115499 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||||| | || |||||||| || ||||| Sbjct 115500 CTTTCCGGTGAGGGTCTTGACAAAAATCTGCAT 115532 >seq909 Length=350832 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || |||||||| ||||| || || || |||||| || |||| || |||||||| || Sbjct 176306 GTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGTTTTCCG 176365 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||||| || | |||||||||||| |||||| ||| Sbjct 176366 GCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTG 176425 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| ||||| || || || | ||| ||||| || || |||| ||| Sbjct 176426 ACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTTAGGGTT 176485 Query 21159 TTGACAAATATTTGCATTTTGAATCTCT 21186 || || || || |||||||| ||||| Sbjct 176486 TTCACGAAAATCTGCATTTTTTCTCTCT 176513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421856441521592