Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq329 102 7e-17 seq37 96.9 3e-15 seq1435 86.0 5e-12 seq865 86.0 5e-12 seq810 82.4 6e-11 >seq329 Length=298387 Score = 102 bits (112), Expect = 7e-17 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGT-GTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 25177 || ||| ||||||||||||| ||| | | |||||||||||||| |||||||| || || Sbjct 180169 AAGATTCACGATAAAGAAGGTATTGCACCT-GATCAACAAAGACTCATCTTTGCTGGGAA 180227 Query 25178 ACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| || || ||| | |||| | || || || |||||||||||||| |||||||| || Sbjct 180228 ACAGTTAGAGGATGGTAGAACTCTTGCAGACTATAATATTCAAAAGGAGTCTACTCTGCA 180287 Query 25238 CATGGTGTTACGATTACGAGGAGGG 25262 |||| | || || |||| ||| Sbjct 180288 TTTGGTACTTCGTTTGAGAGGTGGG 180312 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || ||| | || || || || ||||| ||| |||| || Sbjct 180313 ATGCAAATCTTTGTGAAGACACTTACTGGAAAGACGATTACTTTGGAAGTGGAAAGTTCA 180372 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || ||| |||||||| ||| | || |||||| Sbjct 180373 GATACAATTGATAATGTTAAGACTAAGATTCAGGATAAAGAGGGTATCCCACCAGATCAG 180432 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || |||||||||| || || |||||||| ||| | |||| |||| ||||| ||| Sbjct 180433 CAGAGGATTATCTTTGCTGGGAAGCAATTGGAGGATGGGAGAACTTTGGCAGATTATAAT 180492 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||| ||||| ||||||||||| Sbjct 180493 ATTCAGAAGGAGTCTACTCTTCA 180515 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || ||||||||| || || |||||||| || |||||| | || Sbjct 179950 GACAAAGAAGGGATTCCTCCAGATCAACAGAGGCTAATCTTTGCTGGTAAACAACTCGAG 180009 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | ||| | || |||||||| |||||||||||||| ||||| || Sbjct 180010 GATGGAAGAACCCTTGCAGATTACAACATTCAAAAGGAATCAACTCTCCA 180059 >seq37 Length=1785839 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| ||||||| | || || |||||||| ||| ||| ||| || Sbjct 885699 AAAATGCAGATCTTCGTCAAAACCCTAACCGGAAAAACCATAACCCTAGAAGTAGAATCC 885758 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | | | |||| || || || |||||||| | || || Sbjct 885759 TCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGAC 885818 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | || ||||| || || ||||| ||||||||| | ||| | ||||| ||| Sbjct 885819 CAACAACGCCTCATCTTCGCCGGAAAACAGTTGGAAGATGGAAGAACACTTGCCGACTAC 885878 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || || || |||||||||||||| ||| ||||| | || | || || ||| Sbjct 885879 AACATCCAGAAGGAATCTACTCTCCACTTGGTGCTTCGTCTTCGTGGTGGG 885929 >seq1435 Length=543809 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 25028 TGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA 25087 ||| | ||||||||| ||| | ||||| | || || |||||||| ||| ||| ||| Sbjct 91720 TGTCACAATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGA 91779 Query 25088 ACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGT 25147 | || | || || | | | | |||| || || || ||||| || | || Sbjct 91780 ATCCTCCGATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACC 91839 Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 || || ||| | || ||||| || || || ||||| || ||| | ||| | ||||| Sbjct 91840 GGACCAGCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGA 91899 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||| ||||| |||||||| || |||||| ||||| | || | || || ||| Sbjct 91900 TTACAACATTCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTCGTGGTGGG 91954 >seq865 Length=406355 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| ||||| || |||||| || || || Sbjct 6101 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACTATTACCTTGGAGGTTGAGAGTTCA 6042 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| || || || || ||||| | ||| ||| || Sbjct 6041 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 5982 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || |||||||| || || || | |||||| | ||| | || ||||||||| Sbjct 5981 CAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGATGGGAGGACTCTTGCGGATTACAAT 5922 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| ||||| ||||| ||||| | || || | ||||| Sbjct 5921 ATCCAAAAGGAGTCTACCCTTCATTTGGTGCTTCGTTTGAGGGGAGG 5875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 ||||| ||||||| ||||| || || | ||| ||| || |||||||||||||| | Sbjct 6937 TCAAGGCAAAAATTCAAGATAAGGAGGGCATTCCCCCAGACCAGCAAAGACTTATCTTCG 6878 Query 25171 CGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 | || || ||| | |||||| | ||| | ||||| ||||| || || |||||||| | Sbjct 6877 CCGGAAAGCAACTTGAAGATGGCCGAACCCTTGCCGACTACAACATCCAGAAGGAATCAA 6818 Query 25231 CTCTTCACATGGTG 25244 |||| ||| | ||| Sbjct 6817 CTCTCCACCTTGTG 6804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 ||||| ||||||| ||||| || || | ||| ||| || |||||||||||||| | Sbjct 7232 TCAAGGCAAAAATTCAAGATAAGGAGGGCATTCCCCCAGACCAGCAAAGACTTATCTTCG 7173 Query 25171 CGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 | || || ||| | |||||| | ||| | ||||| ||||| || || |||||||| | Sbjct 7172 CCGGAAAGCAACTTGAAGATGGCCGAACCCTTGCCGACTACAACATCCAGAAGGAATCAA 7113 Query 25231 CTCTTCACATGGTG 25244 |||| ||| | ||| Sbjct 7112 CTCTCCACCTTGTG 7099 >seq810 Length=562993 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | ||||| | || || |||||||| ||| |||| ||| | Sbjct 115989 AATGCAGATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCCTCGAAGTCGAAAGTTC 115930 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | ||||| ||||| ||||| || ||| | ||| ||| || Sbjct 115929 CGACACCATTGACAACGTCAAGGCTAAAATCCAAGATAAGGAGGGTATTCCCCCAGACCA 115870 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| || ||||| || || ||||| | || ||| | |||| | ||||||||||| Sbjct 115869 GCAAAGGCTGATCTTCGCCGGAAAACAGCTCGAGGATGGCCGAACTCTTGCCGATTACAA 115810 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 || || ||||| || ||||| ||| Sbjct 115809 CATCCAGAAGGAGTCAACTCTCCAC 115785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410404974566468