Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq329 167 4e-36 seq1435 109 8e-19 seq1099 95.1 2e-14 seq865 91.5 2e-13 >seq329 Length=298387 Score = 167 bits (184), Expect = 4e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || || || ||| | ||| ||||| | | Sbjct 180085 ATGCAGATCTTTGTTAAGACCCTTACTGGTAAGACCATTACTCTTGAGGTTGAAACTTCT 180144 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| |||| || || ||||| |||||||||||||| |||||||||| Sbjct 180145 GACACGATTGAAAATGTTAAGACC-AAGATTCACGATAAAGAAGGTATTGCACCTGATCA 180203 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| || || ||||| || ||||| ||||||||| || |||| | | ||| ||||| Sbjct 180204 ACAAAGACTCATCTTTGCTGGGAAACAGTTAGAGGATGGTAGAACTCTTGCAGACTATAA 180263 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| || || ||| |||||||||| | ||||| ||||||| || Sbjct 180264 TATTCAAAAGGAGTCTACTCTGCATTTGGTACTTCGTTTGAGAGGTGGGAT 180314 Score = 140 bits (154), Expect = 5e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| || || || || || ||| | || | ||| Sbjct 180313 ATGCAAATCTTTGTGAAGACACTTACTGGAAAGACGATTACTTTGGAAGTGGAAAGTTCA 180372 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| |||| |||| || || ||||| |||||||| ||||| ||||| ||||| Sbjct 180373 GATACAATTGATAATGTTAAGACT-AAGATTCAGGATAAAGAGGGTATCCCACCAGATCA 180431 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| |||| ||||| || || ||||| |||||| | |||| || | ||||||||| Sbjct 180432 GCAGAGGATTATCTTTGCTGGGAAGCAATTGGAGGATGGGAGAACTTTGGCAGATTATAA 180491 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||| || || || ||| | ||| | ||| | ||| | || || ||| Sbjct 180492 TATTCAGAAGGAGTCTACTCTTCATCTTGTTCTTCGTCTGCGTGGGGGT 180540 >seq1435 Length=543809 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| || | || || ||||| || ||||| ||||| |||| | ||| | Sbjct 91724 ACAATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGAATCC 91783 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||||| || | ||| || || ||||| ||||| || || ||||| || Sbjct 91784 TCCGATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCGGAC 91843 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | || || || || || || |||||||||||| | ||||| | | ||||| Sbjct 91844 CAGCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGATTAC 91903 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||| || ||||| || | || ||||| | ||| | || ||||| Sbjct 91904 AACATTCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTCGTGGTGG 91953 >seq1099 Length=206994 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| |||||||| || | ||||| || || || |||||||||||| | ||| |||| Sbjct 74896 TACAGATGCAAATCTTCGTCAAGACTCTTACCGGAAAAACTATAACTCTGGAGGTTGAGA 74955 Query 124594 CAAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 || || ||| ||| |||| || || || ||||||||||| || || || || Sbjct 74956 GTTCCGACACTATTGACAATGTTAAGACC-AAGATCCAAGATAAAGAGGGAATTCCTCCA 75014 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 || || ||| | || || ||||| ||||| ||| | |||||| | || || | | ||| Sbjct 75015 GACCAGCAACGTCTGATCTTTGCCGGAAAGCAACTTGAGGATGGACGTACCCTCGCTGAT 75074 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || ||||| | ||| | || | ||| || | ||||| || Sbjct 75075 TACAACATCCAGAAGGAGTCAACCCTTCATCTTGTGCTCCGTCTAAGGGGTGGGAT 75130 >seq865 Length=406355 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| |||||||| || || || || | ||| ||||| Sbjct 7013 ATGCAGATCTTTGTGAAGACTCTAACAGGGAAGACCATCACCCTCGAGGTTGAAAGCTCC 6954 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || |||||||||||||| || || || || || || || Sbjct 6953 GACACCATTGACAACGTCAAGGCAAAAATTCAAGATAAGGAGGGCATTCCCCCAGACCAG 6894 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| ||||| || || ||||| ||| | || ||| | ||||| | | || || || Sbjct 6893 CAAAGACTTATCTTCGCCGGAAAGCAACTTGAAGATGGCCGAACCCTTGCCGACTACAAC 6834 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||||||| | || | || | ||| | | |||||||| Sbjct 6833 ATCCAGAAGGAATCAACTCTCCACCTTGTGCTTCGTCTTAGGGGTGGTAT 6784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754716956281600