Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq865 102 9e-17 seq810 96.9 4e-15 seq20 95.1 1e-14 seq1663 93.3 5e-14 seq139 82.4 9e-11 >seq865 Length=406355 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || ||||| | ||||||||| | || ||||||||| ||||||||||| || Sbjct 5874 TCCTCCCCTCAAACGAAGCACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCCGC 5933 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||||| | | || || |||||||| || || || || || | ||||||||| | || Sbjct 5934 AAGAGTCCTCCCATCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 5993 Query 43076 CACGCTCTCCTTGTCCATGATTTT 43099 | || ||||||||| ||| || Sbjct 5994 GATGCCTTCCTTGTCCTGGATCTT 6017 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | ||| | || | ||| ||| || || || ||||| || || Sbjct 7407 CCTCCCCTGAGACGGAGCACAAGGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCGGCT 7466 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || ||||| || || ||||| || || | ||||||||| | || Sbjct 7467 AGGGTACGGCCGTCCTCGAGCTGTTTCCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 7526 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCG---CTCGATTC 43132 | | |||||| || ||| || ||||| ||| | | | |||||| ||| || Sbjct 7527 ATACCCTCCTTATCTTGGATCTTAGCTTTGA-CGTTGTCGATTGTGTCGGAACTC---TC 7582 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||| ||||| || || || || || ||||||||||| Sbjct 7583 GACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 7633 >seq810 Length=562993 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || ||||| | ||||| || | || ||| || || ||||||||||| || Sbjct 115077 TCCTCCCCTCAAACGAAGAACCAAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCGC 115136 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||||| | | || || |||||||| || ||||| || | | ||||||||| | || Sbjct 115137 AAGAGTCCTCCCATCCTCCAGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGG 115196 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 43131 | || |||||||| | ||| | || | | | | | | | | ||||| |||| | Sbjct 115197 AATGCCCTCCTTGT-CTTGAATCTTCGCCTTAACATTGTCGATGGTGTCTGAGCTC---T 115252 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || | ||||||||| || ||||| | ||||| || || || ||||| Sbjct 115253 CAACCTCCAACGTGATGGTCTTTCCCGTCAAGGTCTTGACGAAAATCTGCAT 115304 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||||||||||| || ||| | || || || ||||| ||||| || Sbjct 114885 CTCCTTCTGAATGTTGTAATCAGCCAAGGTACGCCCATCCTCAAGTTGCTTCCCAGCAAA 114944 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | || ||||||||| | || | | |||||||||| ||| || || | | Sbjct 114945 GATCAATCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 115004 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||| || |||| ||||| || | |||||||| || || || | ||||| Sbjct 115005 ATCAATCGTATCAGAGCTC---TCCACCTCTAGGGTGATGGTCTTTCCGGTCAAGGTCTT 115061 Query 43169 TACAAAGATTTGCATT 43184 ||||| || |||||| Sbjct 115062 CACAAAAATCTGCATT 115077 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| || ||||| || | || || ||||| || || ||||| Sbjct 115797 CTCCTTCTGGATGTTGTAATCGGCAAGAGTTCGGCCATCCTCGAGCTGTTTTCCGGCGAA 115856 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | |||||||| | || | | |||||| || |||||| |||| ||| Sbjct 115857 GATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATTTTAGCCTTGA-CGT 115915 Query 43112 CGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || | ||||| ||| || |||| ||||||||||| || || || || || | Sbjct 115916 TGTCAATGGTGTCGGAACTTTCGACTTCGAGGGTGATGGTTTTTCCAGTGAGGGTTTTCA 115975 Query 43171 CAAAGATTTGCATT 43184 | ||||| |||||| Sbjct 115976 CGAAGATCTGCATT 115989 >seq20 Length=1286389 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 250527 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAG 250468 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | || ||||| || ||| || |||| | Sbjct 250467 ATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATCTTGGCCTTGACATTG 250408 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || ||| ||||| || || | || |||||||| |||||||| || || || Sbjct 250407 TCAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCCGTTAGGGTTTTCACG 250348 Query 43173 AAGATTTGCATTTTT 43187 || || ||||||||| Sbjct 250347 AAAATCTGCATTTTT 250333 >seq1663 Length=237253 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 10402 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCGGCGAA 10343 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||| ||| || ||| | | Sbjct 10342 GATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATT 10283 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||||| || || | || |||||||| || ||||| || || || Sbjct 10282 GTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCAC 10223 Query 43172 AAAGATTTGCATTTTT 43187 ||||| ||||||||| Sbjct 10222 GAAGATCTGCATTTTT 10207 >seq139 Length=709750 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| || || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 677808 AAAAATTATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 677749 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 677748 TTACCACTATACTAC 677734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571258205137360