Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq20 122 6e-23 seq865 109 4e-19 seq1663 102 5e-17 seq37 98.7 6e-16 seq810 95.1 8e-15 >seq20 Length=1286389 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| ||| ||||| ||||||||||||| || ||| |||| Sbjct 250548 AGCACCAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCT 250489 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| ||||||||||| || | || ||||| || Sbjct 250488 TCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCT 250429 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | ||||| ||||| || || | || |||||| Sbjct 250428 TGGATCTTGGCCTTGACATTGTCAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTT 250369 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || |||||||| || |||||||| Sbjct 250368 TTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 250337 >seq865 Length=406355 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || |||||||| ||||||||||||| || |||| |||| Sbjct 7422 AGCACAAGGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCC 7481 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| || |||| ||||||||| ||| | | |||||| || Sbjct 7482 TCGAGCTGTTTCCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCT 7541 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | | | | || | |||| ||||| || | |||||||| Sbjct 7542 TGGATC-TTAGCTTTGACGTTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATGGT 7600 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| |||||||| ||||| |||||| Sbjct 7601 CTTGCCGGTGAGGGTTTTCACGAAGATTTGCATC 7634 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | ||| ||| ||||| ||||||||||||| || ||| | || Sbjct 6802 AGCACAAGGTGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCATCT 6861 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||| || || | |||||||| ||| | || |||||| || Sbjct 6862 TCAAGTTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATGCCCTCCTTATCT 6921 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || ||| ||| | | | | || | |||| ||| || || | |||||||| Sbjct 6922 TGAATTTTTGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTC 6981 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || ||||| ||||||||||||||||| Sbjct 6982 TTCCCTGTTAGAGTCTTCACAAAGATCTGCAT 7013 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || ||||| || | ||| || ||||| ||||||||||| | || |||| | || Sbjct 6118 AGAACCAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCT 6177 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||||||| ||||| | || ||||||||| ||| | || |||||||| Sbjct 6178 TCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 6237 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | || || |||| || || || Sbjct 6238 TGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTC 6297 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 ||||| || | ||||| || || ||||||||| ||| Sbjct 6298 TTGCCAGTCAAGGTTTTGACGAAAATCTGCATCCCTC 6334 >seq1663 Length=237253 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||||| || || |||| Sbjct 10422 AGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCT 10363 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| || || ||||||||||| ||| | || |||||||| Sbjct 10362 TCAAGCTGTTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 10303 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | | || | || | ||||| || || | || ||||| Sbjct 10302 TGGATCTTG-GCTTTCACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGT 10244 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| ||||| || |||||||| ||||||||||| Sbjct 10243 TTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 10211 >seq37 Length=1785839 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | |||| ||| ||||| ||||||||||||| || | | || Sbjct 885913 AGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTTCCATCT 885854 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||||||| || || ||||| ||||| || || ||||| || | || || ||||| Sbjct 885853 TCCAACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCT 885794 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | | | | || | |||| ||||| || || | || ||||| Sbjct 885793 TGGATC-TTGGCTTTGACGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGGGTTATGGT 885735 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| ||||| || ||||| || ||||||||||| Sbjct 885734 TTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 885702 >seq810 Length=562993 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || ||||| ||||||||||| | || |||| | || Sbjct 115321 AGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCC 115380 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || |||||||| | || ||||||||| ||| | | |||||| || Sbjct 115381 TCAAGTTGCTTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCC 115440 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || ||| ||| | || | | || | |||| || || || | |||||||| Sbjct 115441 TGAATTTTTGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCTAAGGTGATGGTC 115500 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| || || ||||| |||||||| Sbjct 115501 TTTCCGGTGAGGGTCTTGACAAAAATCTGCAT 115532 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| |||||||| || | || |||| |||| Sbjct 116005 AGCACAAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCTAGGGTACGGCCGTCC 116064 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| || || | |||||||| ||| | | |||||| || Sbjct 116065 TCAAGCTGTTTCCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGGATCCCCTCCTTATCT 116124 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | |||||| || | ||||| || Sbjct 116125 TGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGACTTCAAGGGTGATTGTC 116184 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||||||| |||||||||||||| |||||| Sbjct 116185 TTTCCGGTGAGGGTTTTCACAAAGATTTGCATC 116217 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||| |||| || ||| | || Sbjct 115777 AGGACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAATCGGCAAGAGTTCGGCCATCC 115836 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| || |||| |||||||| ||| | | |||||| || Sbjct 115837 TCGAGCTGTTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTATCT 115896 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||| | | | | || | |||| |||||| || | ||||||||| Sbjct 115897 TGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAACTTTCGACTTCGAGGGTGATGGTT 115956 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| |||||||| ||||||||||| Sbjct 115957 TTTCCAGTGAGGGTTTTCACGAAGATCTGCAT 115988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322763848070720