Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq40 109 5e-19 seq66 82.4 7e-11 >seq40 Length=1826671 Score = 109 bits (120), Expect = 5e-19 Identities = 358/549 (65%), Gaps = 17/549 (3%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || ||| |||||||| | ||||||||| |||||||| || || || ||| Sbjct 1767094 GACATAACAGAAGCTTTCTGATATTCCCCAACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 1767035 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | | ||||| ||||| ||||||| || ||| || || ||| | || Sbjct 1767034 TGAAGAGAAATCAACTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACA- 1766976 Query 16049 CCCAATTCCAAC-AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||||| | || | || |||||||| || ||||| || || ||||| |||| | ||||| Sbjct 1766975 CCCAAGTGCAGCTAACAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACA 1766916 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||| |||| | || || || | | || || | || | ||| || || Sbjct 1766915 GTTCATCCCTACCAGCTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCAC 1766856 Query 16168 CGCTTCAATGATTATATC----TCTTACTACACTATTTAACGGAGGGTTTAATAAG-TGT 16222 |||||| | ||| | ||| || ||| | ||| | || || ||| ||| Sbjct 1766855 CGCTTCTTCCACTATTGCCTGAACTTTCTCCAC-ACTTAGCTTTTTCTTCAACAAGCTGT 1766797 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 ||| | || ||||||||||| || | ||||| || | ||| ||||||||| Sbjct 1766796 ----ACAGCAAGCAGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTT 1766741 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 || || || | || ||||||| || || ||||| | ||| ||||| | | || Sbjct 1766740 GAGAAGGTTAATCCGGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGAGCAGAAGCTT 1766681 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG-TTCT 16401 ||||| ||||| || |||||||| || || |||| | || || || | | |||| Sbjct 1766680 CCAGAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCT 1766621 Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 | | || |||||| ||||||| |||||| | || |||||| ||| | Sbjct 1766620 GCT----CCGTCGATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGT 1766565 Query 16462 CTCTATTGC 16470 ||| ||||| Sbjct 1766564 CTCGATTGC 1766556 >seq66 Length=1001823 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| || || ||| |||||||| | |||||||||||||||||| || || || ||| Sbjct 953408 GACATTACAGAAGCTTTCTGATATTCCCCAACTCTCTTTTCAAAGAAGTTAGTCTTCCCT 953349 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | | || || ||||| ||||||| || ||| || || ||| | || Sbjct 953348 TGAAGAGAGATCAACTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACA- 953290 Query 16049 CCCAATTCCA-ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||||| || ||| | ||||| || ||||| || |||||||| |||| | ||||| Sbjct 953289 CCCAAGCGCAGCCAAAAGCCTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACA 953230 Query 16108 GTTCATTCCTATTAATTTAACAGG 16131 |||||| |||| | || ||||| Sbjct 953229 GTTCATCCCTACCAGCTTTACAGG 953206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462059536073200