Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq865 111 1e-19 seq810 107 2e-18 seq1099 95.1 1e-14 >seq865 Length=406355 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| || || |||| | || || ||||| Sbjct 5670 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATCCTCAAGTTG 5729 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || || || ||||||| ||| ||||| || || | ||||||||||||| || || Sbjct 5730 TTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTT 5789 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | ||||| | ||| ||||||| ||| || ||||| || || Sbjct 5790 CGCCTTCACATTATCAATCGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTACCAGT 5849 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| || ||||| Sbjct 5850 CAAGGTCTTCACAAAAATCTGCAT 5873 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || || | || || ||||| ||||||||||| Sbjct 6823 TCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCAAGTTGCTTTCCGGCGAAG 6882 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | | || ||||| || || | |||||||| || ||||||| ||| || Sbjct 6883 ATAAGTCTTTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGAATTTTTGCCTTGACGTTG 6942 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | || ||||| | ||| || ||||| || || |||||||||||| Sbjct 6943 TCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTCCCTGTTAGAGTCTTCACA 7002 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 7003 AAGATCTGCAT 7013 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | |||| || || ||| |||||||| ||||||||||| | Sbjct 6331 CCTCCCCTCAAACGGAGCACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCC 6390 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || | || || || || |||||||| || ||||||| ||| ||||| || || Sbjct 6391 AAAGTACGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 6450 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || ||||| ||| || | | |||| | ||||||| Sbjct 6451 ATTCCTTCCTTATCTTGGATTTTGGCCTTTACGTTGTCAATAGTGTCGGAGCTCTCCACC 6510 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || || |||||||| ||||| || ||||| Sbjct 6511 TCCAAGGTGATGGTCTTTCCTGTAAGAGTCTTAACAAAAATCTGCAT 6557 >seq810 Length=562993 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | |||| ||| || || ||||||||| ||||||||||| | Sbjct 115306 CCTCCCCTCAAACGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 115365 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || | || || ||||| || || ||||| ||||||| ||| ||||| || || Sbjct 115366 AAAGTACGGCCATCCTCAAGTTGCTTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGA 115425 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||| ||| ||||||| ||| || | | | |||| | ||||||| Sbjct 115426 ATACCCTCCTTATCCTGAATTTTTGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACC 115485 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || || || ||||| ||||| || ||||| Sbjct 115486 TCTAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAAATCTGCAT 115532 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | |||||||| || || ||| ||||| || ||||| || Sbjct 115078 CCTCCCCTCAAACGAAGAACCAAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCGCA 115137 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || ||||| || || |||||||| ||||||| ||| ||||| || || Sbjct 115138 AGAGTCCTCCCATCCTCCAGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGA 115197 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| ||| || |||||| | | | |||| | ||| ||| Sbjct 115198 ATGCCCTCCTTGTCTTGAATCTTCGCCTTAACATTGTCGATGGTGTCTGAGCTCTCAACC 115257 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| ||||||| ||||| || || || ||||| Sbjct 115258 TCCAACGTGATGGTCTTTCCCGTCAAGGTCTTGACGAAAATCTGCAT 115304 >seq1099 Length=206994 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| || || ||| | || || || || ||||| || || Sbjct 75320 CTCCTTCTGGATGTTGTAATCTGCAAGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAA 75261 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||||||| ||| || || || || | |||||||||||| ||| || |||||| Sbjct 75260 TATCAACCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTAACATT 75201 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | ||| ||||||| ||||| ||||| || |||| |||||| || Sbjct 75200 GTCAATTGTGTCTGAGCTCTCAACCTCCAGAGTAATAGTCTTCCCAGTCAAAGTCTTGAC 75141 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 75140 AAATATCTGCAT 75129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394698370113502