Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq40 136 4e-27 seq66 109 5e-19 >seq40 Length=1826671 Score = 136 bits (150), Expect = 4e-27 Identities = 564/872 (65%), Gaps = 32/872 (4%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| |||||||| | |||||| || |||||||||||||| || |||| || || || Sbjct 1767080 TTTCTGATATTCCCCAACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTGAAGAGAAATCAA 1767021 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 14030 ||||| |||||||||| ||| ||| |||| ||| |||| || ||| | || Sbjct 1767020 CTCCATCCAATCAAATGGGTTT-ACCACACCGTACACCTTACCACACCCAAGTGCAGCTA 1766962 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 |||||||| |||| |||||||| || ||| ||| | ||||| ||||| |||| | Sbjct 1766961 ACAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAGTTCATCCCTACCA 1766902 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | ||||| || | || || | ||||| ||| || | ||| || || || | Sbjct 1766901 GCTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACCGCTTC--TTCCAC 1766844 Query 14151 TAAT-CGTAATAATTTCATTAGAAGGAGGATATTTT------AGATGTTTAAAAATTAAA 14203 || | | | | | |||| | | || | || | || ||| | | || Sbjct 1766843 TATTGCCTGA-ACTTTCTCCACACTTAGCTTTTTCTTCAACAAGCTGT----ACAGCAAG 1766789 Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||||||||| ||||| || ||||| | || | |||||||| || |||||| Sbjct 1766788 CAGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAAT 1766729 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAA 14322 || ||||| || || || ||||| | ||| |||| || ||| ||| ||| || ||||| Sbjct 1766728 CCGGGCATTAACCCGCGCTTTTTCAGCCAGAATA-TGGAGCAGAAGCTTCCAGAGAAGAA 1766670 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 || || ||||| ||| || || || | || ||| | || ||| || | | ||| Sbjct 1766669 AATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCTCCG-TCG- 1766612 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 |||||| ||||| || | ||| || || | | | || || || || || Sbjct 1766611 -ATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGATTGCGCG 1766553 Query 14443 AAATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || | || || | ||| ||| ||||| || || | || | | |||| Sbjct 1766552 GAAGAGGTGGGATTTAAGGTCGGAGTCTTTG--ATGTAGGTTTCTAAGAGGAGGGAATAC 1766495 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG-- 14558 ||||| ||||| |||||||| || || || || || || || || | || |||| Sbjct 1766494 ATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCCTCTGCT 1766435 Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 ||| || || ||| |||||| |||| | |||||| || || || ||| | Sbjct 1766434 ACC--TGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCAGAGG 1766377 Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAG--TTTTTT 14676 | || || || || | |||| | || |||| |||||| || | |||| | |||| Sbjct 1766376 CGGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATGTTTT 1766317 Query 14677 CCAATCGGC-TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAG 14735 || | ||| |||| || ||||| ||||| || | ||||| || || ||| Sbjct 1766316 CCCAGTGGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCTTCAG 1766257 Query 14736 CTTTTTTATACATTACCCATATTTCTTTATAT 14767 |||| || |||||| |||| |||| | |||| Sbjct 1766256 CTTTCTTGTACATTTCCCAGATTTGTGGATAT 1766225 >seq66 Length=1001823 Score = 109 bits (120), Expect = 5e-19 Identities = 298/450 (66%), Gaps = 20/450 (4%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| |||||||| | |||||| ||||||||||||||||| || |||| || || || Sbjct 953394 TTTCTGATATTCCCCAACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTGAAGAGAGATCAA 953335 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 14030 ||||| |||||||||| ||| ||| |||| ||| |||| || || | | Sbjct 953334 CTCCATCCAATCAAATGGGTTT-ACCACACCGTACACCTTACCACACCCAAGCGCAGCCA 953276 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 | ||||| || | ||||||||||| ||| ||| | ||||| ||||| |||| | Sbjct 953275 AAAGCCTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACCA 953216 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | |||||||| | || || | ||||| || || | ||| || || | || | Sbjct 953215 GCTTTACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACGA 953156 Query 14151 T--AATCGTAATAATTTCATTAGAAGGAGGATATTTT------AGATGTTTAAAAATTAA 14202 | | | | | |||| | | || | || | || ||| | | || Sbjct 953155 TTGACTGG----ACTTTCTCCACACTTAGTTTCTTCTTCAACAAGCTGT----ACAGCAA 953104 Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 || || || ||||| ||||| || || |||| || || |||||||| || ||||| Sbjct 953103 GCAGGCGAAGTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAA 953044 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGA 14321 ||| ||||| || || || ||||| | ||| |||| || ||| ||| |||||| |||| Sbjct 953043 TCCGGGCATTAACCCGCGCTTTTTGAGCCAGAATA-TGGAGCAGAAACTTCCGGAGAAGA 952985 Query 14322 ATATTCCCTCAACTGCAGCAAACGCTATTA 14351 | || || ||||| ||| || || |||| Sbjct 952984 AGATCCCTTCAACGCAAGCGAAAGCAATTA 952955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481873733358160