Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq37 98.7 8e-16 seq865 95.1 9e-15 seq329 89.7 4e-13 >seq37 Length=1785839 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| ||| || || ||||| || || |||||||||||||| Sbjct 885928 CCACCACGAAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCA 885869 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | ||||||||| ||||| || || |||| || | |||||| ||| || Sbjct 885868 AGTGTTCTTCCATCTTCCAACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGG 885809 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| || || || | | || ||||| | | | ||||| || || Sbjct 885808 ATGCCTTCTTTGTCTTGGATCT-TGGCTTTGACGTTGTCGATTGTGTCGGAGGATTCTAC 885750 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| | ||| ||| |||| ||||| | ||||| || || || |||||||| Sbjct 885749 TTCTAGGGTTATGGTTTTTCCGGTTAGGGTTTTGACGAAGATCTGCATTTT 885699 >seq865 Length=406355 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | ||| || |||||||| || || |||||||||||||| Sbjct 6787 CCACCCCTAAGACGAAGCACAAGGTGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCA 6846 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||| | ||| || || || ||||||||||||| || || ||| Sbjct 6847 AGGGTTCGGCCATCTTCAAGTTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGA 6906 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| ||||| | |||||| | ||| ||||| | || Sbjct 6907 ATGCCCTCCTTATCTTGAATTTTTGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACC 6966 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || || || | || || ||||| || ||||| Sbjct 6967 TCGAGGGTGATGGTCTTCCCTGTTAGAGTCTTCACAAAGATCTGCAT 7013 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | ||| || |||||||| || || |||||||||||||| Sbjct 7082 CCACCCCTAAGACGAAGCACAAGGTGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCA 7141 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||| | ||| || || || ||||||||||||| || || ||| Sbjct 7142 AGGGTTCGGCCATCTTCAAGTTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGA 7201 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGAC 18250 | ||| |||||||| ||||| | |||||| Sbjct 7202 ATGCCCTCCTTATCTTGAATTTTTGCCTTGAC 7233 >seq329 Length=298387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||||| || || || || || |||||||| || ||||| || | ||| ||| ||| Sbjct 180297 AAGTACCAAATGCAGAGTAGACTCCTTTTGAATATTATAGTCTGCAAGAGTTCTACCATC 180238 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC-ACGCCTTCCTTAT 18231 || || ||||| || ||| |||| ||||||||||||| || | || | ||||| |||| Sbjct 180237 CTCTAACTGTTTCCCAGCAAAGATGAGTCTTTGTTGAT-CAGGTGCAATACCTTCTTTAT 180179 Query 18232 CGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| ||| | ||| || | | ||| |||||| | || |||| || ||| Sbjct 180178 CGTGAATCTTGGT-CTTAACATTTTCAATCGTGTCAGAAGTTTCAACCTCAAGAGTAATG 180120 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || || | || || ||||| || ||||| Sbjct 180119 GTCTTACCAGTAAGGGTCTTAACAAAGATCTGCAT 180085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378982174817190