Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq40 197 1e-45 seq66 163 3e-35 seq909 131 1e-25 seq20 113 4e-20 seq865 98.7 9e-16 seq37 96.9 3e-15 seq1663 91.5 1e-13 seq1435 89.7 5e-13 >seq40 Length=1826671 Score = 197 bits (218), Expect = 1e-45 Identities = 589/892 (66%), Gaps = 24/892 (3%) Strand=Plus/Plus Query 57536 TAGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAG 57594 |||||| ||| ||||| || || |||||||| | || ||| | |||||||| || || | Sbjct 1766201 TAGATTCTGT-ATGTTCCCAATCAAATATCCACAAATCTGGGAAATGTACAAGAAAGCTG 1766259 Query 57595 AAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATT 57654 |||| || || ||||||| |||||||| || || || |||| || | ||||| Sbjct 1766260 AAGCCTCCTTCTGGACCGCGGAAGAAGTCGATCTCTCAGAGGACAACCGCCACTGGGAAA 1766319 Query 57655 CC---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCAT 57711 | |||| | ||| | | || || | ||| | | || || |||||||| | Sbjct 1766320 ACATCCTCACCGCCGACGAGCAACACTTCATCACCCACATCCTCGCCTTCTTCGCCGCCT 1766379 Query 57712 CCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGG 57771 | || || || || ||| ||| | | || |||||| |||| || || || | | Sbjct 1766380 CTGACGGCATCGTCCTCGAAAATCTCGCCGGAAGATTCATGAAAGACGTCCAGGTAGCAG 1766439 Query 57772 AGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATT 57831 ||||| | ||| ||||| || ||| | |||||||||||| | || || |||||||||| Sbjct 1766440 AGGCGCGCGCCTTCTACGGCTTCCAAATCGCCATTGAAAACATCCACTCGGAAATGTATT 1766499 Query 57832 CGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGA 57891 | || ||| | || || ||| | || ||| |||| ||| || ||| ||| | Sbjct 1766500 CCCTCCTCTTAGAAACCTACATCAAAGACTCCGACCTTAAATCCCACCTCTTCCGCGCAA 1766559 Query 57892 TCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCG 57951 |||| || || ||| | ||||| ||||| ||| | || |||||| | | | Sbjct 1766560 TCGAGACCATCCCCTGTGTGAAGAAGAAAGCAGATTGGGCCCTCCGATGGATCGACGGAG 1766619 Query 57952 CCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTT 58011 | || |||||||| || || || || ||||| || ||||| || ||||| | Sbjct 1766620 CAGAATCC---TTCGCCGAAAGACTTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCT 1766676 Query 58012 CGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACG 58070 | || ||||| ||| || |||| ||| |||| || ||||| | |||||||| | || Sbjct 1766677 CTGGAAGCTTCTGCTCCA-TATTCTGGCTGAAAAAGCGCGGGTTAATGCCCGGATTAACC 1766735 Query 58071 TTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATG 58130 || ||||||||||||||||| || || || || || ||||||||| ||| | || Sbjct 1766736 TTCTCAAACGAGTTGATATCGCGTGATGAAGGGCTTCACTGTGATTTTGCCTGCTTGCTG 1766795 Query 58131 TACTCTCACATTGTCAATAAACCGACGCG-GGATCGCATCTT--GGACATTATCACCGAG 58187 ||| | ||| | ||| | | | | ||| | | || || || | || Sbjct 1766796 TAC-AGCTTGTTGAAGAAAAAGCTAAGTGTGGA--GAAAGTTCAGGCAATAGTGGAAGAA 1766852 Query 58188 GCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATG 58247 ||||| ||||||||| || || || || || | || ||||| || | || ||| Sbjct 1766853 GCGGTGGCGATCGAACGCGAATTCGTGACGGATTCGCTGCCGGTAAAGCTGGTAGGGATG 1766912 Query 58248 AACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACT-TTTGCTCGAACT 58306 ||| ||| | ||| ||||||||||||||||||| || ||| | || ||| | ||| Sbjct 1766913 AACTGTGAGCTTATGAGTCAGTACATTGAGTTTGTTGCTGATAGATTGTTAGCT-GCACT 1766971 Query 58307 ---GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTC 58363 | ||| || || ||| | ||| || ||||||| ||| | |||| || Sbjct 1766972 TGGGTGTGGTAAG-GT--GTACGGTGTGGTAAACCCATTTGATTGGATGGAGTTGATTTC 1767028 Query 58364 GCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415 || | || ||||| ||||| || || || | |||| | |||||||| ||| Sbjct 1767029 TCTTCAAGGGAAGACTAACTTCTTTGAGAAGAGAGTTGGGGAATATCAGAAA 1767080 >seq66 Length=1001823 Score = 163 bits (180), Expect = 3e-35 Identities = 581/894 (65%), Gaps = 28/894 (3%) Strand=Plus/Plus Query 57536 TAGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAG 57594 |||||| ||| ||||| || || |||| ||| | || ||| | |||||||| ||||| | Sbjct 952515 TAGATTCTGT-ATGTTCCCAATCAAATACCCACAAATCTGGGAGATGTACAAGAAGGCTG 952573 Query 57595 AAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATT 57654 |||| || || ||||| | |||||||||||||| || | || | ||||||| Sbjct 952574 AAGCCTCCTTCTGGACAGCGGAAGAAGTAGACCTCTCACAAGACAACCGTCATTGGGAAA 952633 Query 57655 CC---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCAT 57711 || |||| | ||| | | ||||| | || | | || || |||||||| | Sbjct 952634 CCGCGCTCACCGCCGACGAGCAACACTTTATCACCCATATCCTCGCCTTCTTCGCCGCCT 952693 Query 57712 CCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGG 57771 |||| || || || || ||| | | || ||||| |||| || || || | | Sbjct 952694 CCGACGGCATAGTCCTAGAAAATCTCGCCGGCAGATTCATGAAAGAGGTCCAGGTTGCTG 952753 Query 57772 AGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATT 57831 ||||| | ||| ||||| || ||| | || || |||||| | || || |||||||| | Sbjct 952754 AGGCGCGCGCCTTCTACGGGTTCCAAATAGCAATCGAAAACATCCACTCCGAAATGTACT 952813 Query 57832 CGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGA 57891 | || ||| | || || ||| | || ||| || ||| || ||| || | Sbjct 952814 CTCTCCTCCTAGAAACCTACATCAAAGACTCAGAGCTTAAATCCCACCTCTTCCGAGCAA 952873 Query 57892 TCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGC 57950 |||| || || ||| ||| | ||||| || |||||| | || |||||| | || Sbjct 952874 TCGAGACCATCCCCTGCG-TGAAGAAGAAAGCGGAGTGGGCCCTCCGATGGATTGACGGC 952932 Query 57951 GCC-ACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 || | || || |||||||||||||| || ||||| ||| ||||| || ||||| Sbjct 952933 GCAGAATGC----TTTGCCGAGAGGCTAATTGCTTTCGCTTGCGTTGAAGGGATCTTCTT 952988 Query 58010 TTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGA 58068 || || || || ||| | ||||| ||| | || || ||||| | |||||||| | | Sbjct 952989 CTCCGGAAGTTTCTGC-TCCATATTCTGGCTCAAAAAGCGCGGGTTAATGCCCGGATTAA 953047 Query 58069 CGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAA 58128 | || |||||| |||||||||| ||||| || || || ||| || || ||| | Sbjct 953048 CCTTCTCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGACTTCGCCTGCTTGC 953107 Query 58129 TGTACTCTCACATTGT----CAATAAACCGACGCGGGATCGCATCTTGGACATTATCACC 58184 |||| || |||| || |||| | ||| || | || | Sbjct 953108 TGTA----CAGCTTGTTGAAGAAGAAACTAAGTGTGGAGAAAGTCCAGTCAATCGTAGAA 953163 Query 58185 GAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGT 58244 || ||||| || ||||| ||| || || || || | || || || || | || Sbjct 953164 GAAGCGGTGGCAATCGAGCGTGAATTCGTGACGGATTCGCTGCCTGTAAAGCTGGTAGGG 953223 Query 58245 ATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAA 58304 |||||| ||| ||||| |||| ||||||||||| || || || |||||| | Sbjct 953224 ATGAACTGTGAGCTGATGAGTCAGTATATTGAGTTTGTCGCAGATAGGCTTTTGGCTGCG 953283 Query 58305 CT---GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATC 58361 || | ||| || || ||| | ||| || ||||||| ||| | ||||| Sbjct 953284 CTTGGGTGTGGTAAG-GT--GTACGGTGTGGTAAACCCATTTGATTGGATGGAGTTGATC 953340 Query 58362 TCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415 || || | || ||||| ||||| || ||||| | |||| | |||||||| ||| Sbjct 953341 TCTCTTCAAGGGAAGACTAACTTCTTTGAAAAGAGAGTTGGGGAATATCAGAAA 953394 >seq909 Length=350832 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| |||||||| || || || || || ||||| || ||| | || |||||| | Sbjct 176506 AAAAATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAGGTTGAATC 176447 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | |||| | |||||| | || |||||||||||| | || || || Sbjct 176446 CTCCGATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCACCAGA 176387 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| ||||| || ||||| || |||||| | |||||| || | |||||| Sbjct 176386 CCAGCAACGTCTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGAACCCTAGCCGATTA 176327 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| ||||| || ||||| ||||| ||| | || ||||| ||| Sbjct 176326 CAACATCCAAAAGGAATCAACACTTCACCTGGTTCTTCGTCTTAGGGGTGGT 176275 >seq20 Length=1286389 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| |||||||| || || || || || ||||| || ||| | || |||||| | Sbjct 250333 AAAAATGCAGATTTTCGTGAAAACCCTAACGGGGAAAACCATAACCCTAGAGGTTGAATC 250392 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | || | ||||| | || || ||||||||| | || || || Sbjct 250393 CTCCGATACCATTGACAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATCCCTCCAGA 250452 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||||||| || ||||| || || ||| | |||||| || | ||| || Sbjct 250453 CCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGAACCCTAGCCGACTA 250512 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || ||||| |||||||| ||||| ||| | || ||||| ||| Sbjct 250513 CAACATCCAGAAGGAATCAACTCTTCACCTGGTGCTTCGTCTTAGGGGTGGT 250564 >seq865 Length=406355 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| ||||| || || ||| | || ||||| || Sbjct 6101 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACTATTACCTTGGAGGTTGAGAGTTCA 6042 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||||| | || || |||||| Sbjct 6041 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 5982 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || ||| | ||||| | |||| | ||||| || Sbjct 5981 CAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGATGGGAGGACTCTTGCGGATTACAAT 5922 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || |||||| |||| ||| | ||||||| || Sbjct 5921 ATCCAAAAGGAGTCTACCCTTCATTTGGTGCTTCGTTTGAGGGGAGG 5875 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| ||||| || || |||||| | || || || ||| Sbjct 6557 ATGCAGATTTTTGTTAAGACTCTTACAGGAAAGACCATCACCTTGGAGGTGGAGAGCTCC 6498 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | ||| || |||||||| | || || |||||| Sbjct 6497 GACACTATTGACAACGTAAAGGCCAAAATCCAAGATAAGGAAGGAATCCCCCCAGACCAG 6438 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || ||| | ||||| ||| || || || ||| Sbjct 6437 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGTACTTTGGCTGACTACAAC 6378 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| || ||||||||||| || | ||||||| || Sbjct 6377 ATCCAGAAGGAATCCACCCTTCATCTGGTGCTCCGTTTGAGGGGAGG 6331 >seq37 Length=1785839 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || ||||| || ||| | || || ||| | Sbjct 885699 AAAATGCAGATCTTCGTCAAAACCCTAACCGGAAAAACCATAACCCTAGAAGTAGAATCC 885758 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | |||||| | || ||||| |||||| | || || ||| Sbjct 885759 TCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGAC 885818 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || || || || ||||| || |||||||||||||| | || | ||| || Sbjct 885819 CAACAACGCCTCATCTTCGCCGGAAAACAGTTGGAAGATGGAAGAACACTTGCCGACTAC 885878 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || ||||| ||||| || |||| ||| Sbjct 885879 AACATCCAGAAGGAATCTACTCTCCACTTGGTGCTT 885914 >seq1663 Length=237253 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| || || || || || ||||| || ||| | || || ||| | Sbjct 10207 AAAAATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTAGAATC 10266 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || ||| | || |||||||||||| | || || || Sbjct 10267 CTCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGA 10326 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||||||| || ||||| || |||||| | |||||| Sbjct 10327 CCAGCAGCGTCTTATCTTCGCCGGAAAACAGCTTGAAGAC 10366 >seq1435 Length=543809 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || ||||| || ||| | || || ||| | ||| Sbjct 91727 ATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGAATCCTCC 91786 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | || ||||| || || | || || |||||| Sbjct 91787 GATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCGGACCAG 91846 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || ||||| || || || || || || | || | |||||| ||| Sbjct 91847 CAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGATTACAAC 91906 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || |||||||| ||||| |||| || Sbjct 91907 ATTCAGAAGGAATCGACCCTTCACTTGGTGCT 91938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445330317875040