Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq66 185 1e-41 seq40 163 4e-35 seq752 100 4e-16 seq477 91.5 2e-13 >seq66 Length=1001823 Score = 185 bits (204), Expect = 1e-41 Identities = 407/608 (67%), Gaps = 9/608 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || ||||| || ||||| || || ||||||| || | ||||| || | Sbjct 953110 ACAGCAAGCAGGCGAAGTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGA 953051 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || | ||||||||||| || |||||||| ||||| |||||||| ||| ||||| Sbjct 953050 AGGTTAATCCGGGCATTAACCCGCGCTTTTTGAGCCAGAATATGGAGCAGAAACTTCCGG 952991 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGC 33750 | |||||||| ||||| || ||| || ||||| || ||||| || | | | |||| Sbjct 952990 AGAAGAAGATCCCTTCAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCGC 952931 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 |||| ||||| | ||||| || || ||||| || || || || || || || | Sbjct 952930 CGTCA---ATCCATCGGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGA 952874 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | || ||||| | | ||| | ||||| | || || || | | ||| Sbjct 952873 TTGCTCGGAAGAGGTGGGATTTAAGCTCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAG 952814 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||||||| || || |||||||| || || || || || |||||||| | |||| Sbjct 952813 AGTACATTTCGGAGTGGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCT 952754 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 | | || ||| || ||| | |||| | || | |||||| ||||| || || Sbjct 952753 CAGCAACCTGGACCTCTTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGG 952694 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TT 34047 ||| || || || || | | ||| | ||||| | || ||||| | || || Sbjct 952693 AGGCGGCGAAGAAGGCGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGG 952634 Query 34048 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 | | ||||| | | | |||| || | || ||||||||| ||||||| || || || | Sbjct 952633 TTTCCCAATGACGGTTGTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTT 952574 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 | ||||| || ||||| | |||||| | | |||| ||||||||| ||| ||||||| Sbjct 952573 CAGCCTTCTTGTACATCTCCCAGATTTGTGGGTATTTGATTGGGAACATACAGAATCTAT 952514 Query 34168 TTGGATTT 34175 ||| ||| Sbjct 952513 CTGGGTTT 952506 >seq40 Length=1826671 Score = 163 bits (180), Expect = 4e-35 Identities = 402/608 (66%), Gaps = 9/608 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || || ||||| ||||| || || || || | || || ||||| || | Sbjct 1766796 ACAGCAAGCAGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGA 1766737 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || | ||||||||||| || |||||||| ||||| |||||||| ||| ||| | Sbjct 1766736 AGGTTAATCCGGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGAGCAGAAGCTTCCAG 1766677 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCGC 33750 | ||||| || ||||| || ||| || ||||||||||| || | | | || | Sbjct 1766676 AGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCTC 1766617 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| ||||| | |||||||| || ||||| || ||||| || || || || | Sbjct 1766616 CGTC---GATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGA 1766560 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | || ||||| | | ||| | ||||| | || || || | | || Sbjct 1766559 TTGCGCGGAAGAGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGG 1766500 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||||||||||| || |||||||||||||| || || || |||||||| | |||| Sbjct 1766499 AATACATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCCT 1766440 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 | | | ||| || ||| | |||| | | || | |||||| || || || ||| Sbjct 1766439 CTGCTACCTGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCAG 1766380 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TT 34047 ||| || || || || | | || | || || | || ||||| | || || | Sbjct 1766379 AGGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATGT 1766320 Query 34048 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 | | ||| | | | || | || | ||| ||||||||| | ||||| || || || | Sbjct 1766319 TTTCCCAGTGGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCTT 1766260 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 | || || || ||||| | |||||| | |||||| ||||||||| ||| ||||||| Sbjct 1766259 CAGCTTTCTTGTACATTTCCCAGATTTGTGGATATTTGATTGGGAACATACAGAATCTAT 1766200 Query 34168 TTGGATTT 34175 ||| ||| Sbjct 1766199 CTGGGTTT 1766192 >seq752 Length=99127 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | |||| || || | |||| | |||| |||||| |||| ||| || Sbjct 76763 TCCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGAACAATGCC 76822 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 |||||| | ||||| ||||| ||||| | |||| ||||||| || || || || Sbjct 76823 ATTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 76882 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | || || || || || ||| ||| | || || || || |||||||| || Sbjct 76883 AACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACACTCCTTCAAAGTGTCATAAAT 76942 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| ||||||||||| |||| || | ||||| |||||| Sbjct 76943 CCCTTCAATGCTATCATCTTTCATATTGATCAGAAAGCAGCTA 76985 >seq477 Length=199787 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | |||| || || | |||| | |||| |||||| || | ||| || Sbjct 10372 TCCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGGACAATGCC 10313 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 |||||| | ||||| ||||| ||||| | |||| ||||||| || || || || Sbjct 10312 ATTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 10253 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | || || || || || ||| ||| | || || || | |||||||| || Sbjct 10252 AACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACACTCCTTCAGAGTGTCATAAAT 10193 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| ||||||||||| |||| || | ||||| |||||| Sbjct 10192 CCCTTCAATGCTATCATCTTTCATATTGATGAGAAAGCAGCTA 10150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629201465187360