Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq66 176 6e-39 seq40 167 3e-36 >seq66 Length=1001823 Score = 176 bits (194), Expect = 6e-39 Identities = 582/898 (65%), Gaps = 19/898 (2%) Strand=Plus/Minus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || ||||| || || | ||||| || || ||||| || |||| | || || Sbjct 953394 TTTCTGATATTCCCCAACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTGAAGAGAGATCAA 953335 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| |||| ||||| || | ||| || | || | | || | ||| | Sbjct 953334 CTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACACCCAAGCGCAGCCAA 953275 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 | |||||||||||||| || ||||| |||||| ||||| ||||| |||| || Sbjct 953274 AAGCCTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACCAG 953215 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 || || || || | | || | ||||| | || || | ||||| ||| || || Sbjct 953214 CTTTACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACGAT 953155 Query 36106 AGATATTACTGTTTCTTCACTCGGTGGATAC---AATAAA-TGTTTAAACATCAAACATG 36161 || ||| | || |||| || | | || || ||| ||| ||| || | Sbjct 953154 TGACTGGACTTTCTCCACACTTAGTTTCTTCTTCAACAAGCTGT----ACAGCAAGCAGG 953099 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 |||| || ||||| || || ||||||| || | ||||| || || || | ||||| Sbjct 953098 CGAAGTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAATCCGG 953039 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATT 36280 |||||| || |||||||| ||||| |||||||| ||| || ||| || ||||| || Sbjct 953038 GCATTAACCCGCGCTTTTTGAGCCAGAATATGGA-GCAGAAACTTCCGGAGAAGAAGATC 952980 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATC 36337 ||||| || || || ||||| || ||||| || | | | || | |||| ||| Sbjct 952979 CCTTCAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCGCCGTCA---ATC 952923 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 || | ||||| || || ||||| || || || || || ||||| || || ||| Sbjct 952922 CATCGGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATTGCTCGGAAG 952863 Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457 || | | ||| | ||||| | || || || | | ||| |||||||| Sbjct 952862 AGGTGGGATTTAAGCTCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAGTACATTTCG 952803 Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517 || || |||||||| || || ||||| || |||||||| | ||||| | || ||| Sbjct 952802 GAGTGGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCTCAGCAACCTGG 952743 Query 36518 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 || ||| | |||| | || | |||||| ||||| ||||| ||| || || Sbjct 952742 ACCTCTTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGGAGGCGGCGAAG 952683 Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAG---TTTATTCCAATCA 36634 || || | | ||| | ||||| | || |||| | || || | | ||||| | Sbjct 952682 AAGGCGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGGTTTCCCAATGA 952623 Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 36694 | | |||| || | || ||||||||| ||||||| || || || || ||||| || Sbjct 952622 CGGTTGTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTTCAGCCTTCTTG 952563 Query 36695 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 ||||| | |||||| | | |||| ||||| || ||| ||||||| | | |||| Sbjct 952562 TACATCTCCCAGATTTGTGGGTATTTGATTGGGAACATACAGAATCTATCTGGGTTTT 952505 >seq40 Length=1826671 Score = 167 bits (184), Expect = 3e-36 Identities = 580/898 (65%), Gaps = 19/898 (2%) Strand=Plus/Minus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || ||||| || || | || || || || ||||| || |||| | || || Sbjct 1767080 TTTCTGATATTCCCCAACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTGAAGAGAAATCAA 1767021 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| |||| ||||| || | ||| || | || | | || | | ||| | Sbjct 1767020 CTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACACCCAAGTGCAGCTAA 1766961 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 ||||||||| || ||||| || || || |||| | ||||| ||||| |||| || Sbjct 1766960 CAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAGTTCATCCCTACCAG 1766901 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 || || || || | | || | ||||| |||| || | ||||| ||| | || Sbjct 1766900 CTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACCGCTTCTTCCACTAT 1766841 Query 36106 AGATATTACTGTTTCTTCACTCGG---TGGATACAATAAA-TGTTTAAACATCAAACATG 36161 | ||| | || |||| | | | ||| || ||| ||| ||| || | Sbjct 1766840 TGCCTGAACTTTCTCCACACTTAGCTTTTTCTTCAACAAGCTGT----ACAGCAAGCAGG 1766785 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 | ||||| ||||| || || || || | || || ||||| || || || | ||||| Sbjct 1766784 CAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAATCCGG 1766725 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATT 36280 |||||| || |||||||| ||||| |||||||| ||| | | | ||||| |||||||| Sbjct 1766724 GCATTAACCCGCGCTTTTTCAGCCAGAATATGGA-GCAGAAGCTTCCAGAGAAGAAAATC 1766666 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCACTGTCATGTATC 36337 ||||| || || || ||||||||||| || | | | || | ||| ||| Sbjct 1766665 CCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCTCCGTC---GATC 1766609 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 || | |||||||| || ||||| || ||||| || || ||||| || || ||| Sbjct 1766608 CATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGATTGCGCGGAAG 1766549 Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457 || | | ||| | ||||| | || || || | | || |||||||||| Sbjct 1766548 AGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGGAATACATTTCC 1766489 Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517 || || |||||||||||||| ||||| || |||||||| | ||||| | | ||| Sbjct 1766488 GAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCCTCTGCTACCTGG 1766429 Query 36518 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 || ||| | |||| | | || | |||||| || || |||||| ||| || || Sbjct 1766428 ACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCAGAGGCGGCGAAG 1766369 Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAG---TTTATTCCAATCA 36634 || || | | || | || || | || |||| | || || || | ||| | Sbjct 1766368 AAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATGTTTTCCCAGTGG 1766309 Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 36694 | | || | || | ||| ||||||||| | ||||| || || || || || || || Sbjct 1766308 CGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCTTCAGCTTTCTTG 1766249 Query 36695 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 ||||| | |||||| | |||||| ||||| || ||| ||||||| | | |||| Sbjct 1766248 TACATTTCCCAGATTTGTGGATATTTGATTGGGAACATACAGAATCTATCTGGGTTTT 1766191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657528926004080