Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq909 93.3 4e-14 seq37 91.5 1e-13 seq865 84.2 2e-11 >seq909 Length=350832 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||||| || || || ||||| ||||| |||||| | || | Sbjct 176287 ACGAAGAACCAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCC 176346 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| |||||||| || || |||| ||||||||||| || || || |||||||| || Sbjct 176347 GTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTT 176406 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||| | | || | || |||| || || ||||| | ||| | Sbjct 176407 GTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTAT 176466 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | ||||| ||||| || ||||| Sbjct 176467 GGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCAT 176502 >seq37 Length=1785839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 139533 CATGG--CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATA 139590 ||||| || || || | ||| | || ||||| | ||||| || || || ||||| || Sbjct 885935 CATGGTCCCACCACGAAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTA 885876 Query 139591 ATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650 ||| | ||| || ||||| | |||||| || || |||| || ||||| || || Sbjct 885875 GTCGGCAAGTGTTCTTCCATCTTCCAACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTC 885816 Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGG 139710 || || |||||||||||||| ||| || ||| | | || | |||||||| || Sbjct 885815 CGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGGA 885756 Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || | ||| | || || ||||| | ||||| ||||| || ||||| Sbjct 885755 TTCTACTTCTAGGGTTATGGTTTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 885702 >seq865 Length=406355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || |||||||| || ||||| || ||| | || | ||| |||||||| Sbjct 7430 GTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCCTCGAGCTG 7489 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| || || ||||||| | ||||| || || || || || || || || ||| || Sbjct 7490 TTTCCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATCTT 7549 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | || | |||||||| ||| ||||| | || | ||||||||||| Sbjct 7550 AGCTTTGACGTTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTGCCGGT 7609 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| |||||||| Sbjct 7610 GAGGGTTTTCACGAAGATTTGCAT 7633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495578712990400