Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq66 181 2e-40 seq40 158 2e-33 seq752 96.9 5e-15 seq477 87.8 3e-12 >seq66 Length=1001823 Score = 181 bits (200), Expect = 2e-40 Identities = 508/773 (66%), Gaps = 19/773 (2%) Strand=Plus/Minus Query 49792 CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 49851 ||||| |||||||| || ||||| |||||| ||||| ||||| |||| || || Sbjct 953270 CTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACCAGCTTT 953211 Query 49852 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 49911 || || || | | || | ||||| | || || | ||||| ||| || || || Sbjct 953210 ACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACGATTGAC 953151 Query 49912 CTAACGGTTTCTTCACTCGGTGGATGC---AATAAA-TGTTTAAACATCAAACATGCGAA 49967 || | || |||| || | | || || ||| ||| ||| || ||||| Sbjct 953150 TGGACTTTCTCCACACTTAGTTTCTTCTTCAACAAGCTGT----ACAGCAAGCAGGCGAA 953095 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 || ||||| || || ||||||| || || ||||| || || || | ||||||||| Sbjct 953094 GTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAATCCGGGCAT 953035 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTT 50086 || || |||||||| ||||| |||||||| ||| || || || |||||||| |||| Sbjct 953034 TAACCCGCGCTTTTTGAGCCAGAATATGGA-GCAGAAACTTCCGGAGAAGAAGATCCCTT 952976 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG---GCGCTGTCATGTATCCACT 50143 | || || || |||| || ||||| || | | |||| |||| ||||| Sbjct 952975 CAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCGCCGTCA---ATCCATC 952919 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 | ||||| || || ||||| || || || || || || || || || ||||| | Sbjct 952918 GGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATTGCTCGGAAGAGGT 952859 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | ||| | ||||| | || || || | | ||| |||||||| || | Sbjct 952858 GGGATTTAAGCTCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAGTACATTTCGGAGT 952799 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | |||||||| || || || || || |||||||| | ||||| | || ||| || | Sbjct 952798 GGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCTCAGCAACCTGGACCT 952739 Query 50324 CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383 || | |||| | || | |||||| ||||| ||||| ||| || || || | Sbjct 952738 CTTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGGAGGCGGCGAAGAAGG 952679 Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT---TATTCCAATCATTGA 50440 | | | ||| | ||||| |||| |||| || || || | | ||||| | | Sbjct 952678 CGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGGTTTCCCAATGACGGT 952619 Query 50441 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 50500 | |||| || | |||||||||||| ||||||| || || || || ||||| || |||| Sbjct 952618 TGTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTTCAGCCTTCTTGTACA 952559 Query 50501 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 | | |||||| | | |||| ||||||||| ||| ||||||| ||| ||| Sbjct 952558 TCTCCCAGATTTGTGGGTATTTGATTGGGAACATACAGAATCTATCTGGGTTT 952506 >seq40 Length=1826671 Score = 158 bits (174), Expect = 2e-33 Identities = 404/609 (66%), Gaps = 11/609 (2%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || || ||||| ||||| || || || || | || | ||||| || | Sbjct 1766796 ACAGCAAGCAGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGA 1766737 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCA 50070 | || | ||||||||||| || |||||||| ||||| |||||||| ||| | | ||| Sbjct 1766736 AGGTTAATCCGGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGA-GCAGAAGCTTCCA 1766678 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTG-GCG 50127 || ||||| || ||||| || || || |||| |||||| || | | | | || Sbjct 1766677 GAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCT 1766618 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||| | |||||||| || ||||| || ||||| || || || || Sbjct 1766617 CCGTCG---ATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCG 1766561 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || ||||| | | ||| | ||||| | || || || | | || Sbjct 1766560 ATTGCGCGGAAGAGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGG 1766501 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 |||||||||||| || |||||||||||||| || || || |||||||| | ||| Sbjct 1766500 GAATACATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCC 1766441 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || | | ||| || ||| | |||| | | || | |||||| || || |||||| Sbjct 1766440 TCTGCTACCTGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCA 1766381 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---T 50424 ||| || || || || | | || | || || |||| |||| || || || Sbjct 1766380 GAGGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATG 1766321 Query 50425 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 || | ||| | | | || | || | ||| ||||||||| | ||||| || || || Sbjct 1766320 TTTTCCCAGTGGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCT 1766261 Query 50485 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 50544 || || || || ||||| | |||||| | |||||| ||||||||| ||| |||||| Sbjct 1766260 TCAGCTTTCTTGTACATTTCCCAGATTTGTGGATATTTGATTGGGAACATACAGAATCTA 1766201 Query 50545 TTTGGATTT 50553 | ||| ||| Sbjct 1766200 TCTGGGTTT 1766192 >seq752 Length=99127 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | |||| || || | |||| | |||| |||||| |||| ||| || Sbjct 76763 TCCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGAACAATGCC 76822 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || ||||| |||||| ||||||| || || || || Sbjct 76823 ATTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 76882 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | || || || || || ||| ||| | || || || || || ||||| || Sbjct 76883 AACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACACTCCTTCAAAGTGTCATAAAT 76942 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 || || ||||||||||| |||| || | ||||| |||||| Sbjct 76943 CCCTTCAATGCTATCATCTTTCATATTGATCAGAAAGCAGCTA 76985 >seq477 Length=199787 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | |||| || || | |||| | |||| |||||| || | ||| || Sbjct 10372 TCCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGGACAATGCC 10313 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || ||||| |||||| ||||||| || || || || Sbjct 10312 ATTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 10253 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | || || || || || ||| ||| | || || || | || ||||| || Sbjct 10252 AACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACACTCCTTCAGAGTGTCATAAAT 10193 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 || || ||||||||||| |||| || | ||||| |||||| Sbjct 10192 CCCTTCAATGCTATCATCTTTCATATTGATGAGAAAGCAGCTA 10150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717566135589680