Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq66 181 2e-40
seq40 158 2e-33
seq752 96.9 5e-15
seq477 87.8 3e-12
>seq66
Length=1001823
Score = 181 bits (200), Expect = 2e-40
Identities = 508/773 (66%), Gaps = 19/773 (2%)
Strand=Plus/Minus
Query 49792 CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 49851
||||| |||||||| || ||||| |||||| ||||| ||||| |||| || ||
Sbjct 953270 CTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACCAGCTTT 953211
Query 49852 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 49911
|| || || | | || | ||||| | || || | ||||| ||| || || ||
Sbjct 953210 ACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACGATTGAC 953151
Query 49912 CTAACGGTTTCTTCACTCGGTGGATGC---AATAAA-TGTTTAAACATCAAACATGCGAA 49967
|| | || |||| || | | || || ||| ||| ||| || |||||
Sbjct 953150 TGGACTTTCTCCACACTTAGTTTCTTCTTCAACAAGCTGT----ACAGCAAGCAGGCGAA 953095
Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027
|| ||||| || || ||||||| || || ||||| || || || | |||||||||
Sbjct 953094 GTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAATCCGGGCAT 953035
Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTT 50086
|| || |||||||| ||||| |||||||| ||| || || || |||||||| ||||
Sbjct 953034 TAACCCGCGCTTTTTGAGCCAGAATATGGA-GCAGAAACTTCCGGAGAAGAAGATCCCTT 952976
Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG---GCGCTGTCATGTATCCACT 50143
| || || || |||| || ||||| || | | |||| |||| |||||
Sbjct 952975 CAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCGCCGTCA---ATCCATC 952919
Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203
| ||||| || || ||||| || || || || || || || || || ||||| |
Sbjct 952918 GGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATTGCTCGGAAGAGGT 952859
Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263
| ||| | ||||| | || || || | | ||| |||||||| || |
Sbjct 952858 GGGATTTAAGCTCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAGTACATTTCGGAGT 952799
Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323
| |||||||| || || || || || |||||||| | ||||| | || ||| || |
Sbjct 952798 GGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCTCAGCAACCTGGACCT 952739
Query 50324 CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383
|| | |||| | || | |||||| ||||| ||||| ||| || || || |
Sbjct 952738 CTTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGGAGGCGGCGAAGAAGG 952679
Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT---TATTCCAATCATTGA 50440
| | | ||| | ||||| |||| |||| || || || | | ||||| | |
Sbjct 952678 CGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGGTTTCCCAATGACGGT 952619
Query 50441 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 50500
| |||| || | |||||||||||| ||||||| || || || || ||||| || ||||
Sbjct 952618 TGTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTTCAGCCTTCTTGTACA 952559
Query 50501 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553
| | |||||| | | |||| ||||||||| ||| ||||||| ||| |||
Sbjct 952558 TCTCCCAGATTTGTGGGTATTTGATTGGGAACATACAGAATCTATCTGGGTTT 952506
>seq40
Length=1826671
Score = 158 bits (174), Expect = 2e-33
Identities = 404/609 (66%), Gaps = 11/609 (2%)
Strand=Plus/Minus
Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011
||| ||| || || ||||| ||||| || || || || | || | ||||| || |
Sbjct 1766796 ACAGCAAGCAGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGA 1766737
Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCA 50070
| || | ||||||||||| || |||||||| ||||| |||||||| ||| | | |||
Sbjct 1766736 AGGTTAATCCGGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGA-GCAGAAGCTTCCA 1766678
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTG-GCG 50127
|| ||||| || ||||| || || || |||| |||||| || | | | | ||
Sbjct 1766677 GAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCT 1766618
Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187
| ||| ||||| | |||||||| || ||||| || ||||| || || || ||
Sbjct 1766617 CCGTCG---ATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCG 1766561
Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247
|| || ||||| | | ||| | ||||| | || || || | | ||
Sbjct 1766560 ATTGCGCGGAAGAGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGG 1766501
Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307
|||||||||||| || |||||||||||||| || || || |||||||| | |||
Sbjct 1766500 GAATACATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCC 1766441
Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367
|| | | ||| || ||| | |||| | | || | |||||| || || ||||||
Sbjct 1766440 TCTGCTACCTGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCA 1766381
Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---T 50424
||| || || || || | | || | || || |||| |||| || || ||
Sbjct 1766380 GAGGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATG 1766321
Query 50425 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484
|| | ||| | | | || | || | ||| ||||||||| | ||||| || || ||
Sbjct 1766320 TTTTCCCAGTGGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCT 1766261
Query 50485 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 50544
|| || || || ||||| | |||||| | |||||| ||||||||| ||| ||||||
Sbjct 1766260 TCAGCTTTCTTGTACATTTCCCAGATTTGTGGATATTTGATTGGGAACATACAGAATCTA 1766201
Query 50545 TTTGGATTT 50553
| ||| |||
Sbjct 1766200 TCTGGGTTT 1766192
>seq752
Length=99127
Score = 96.9 bits (106), Expect = 5e-15
Identities = 155/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| || || | |||| || || | |||| | |||| |||||| |||| ||| ||
Sbjct 76763 TCCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGAACAATGCC 76822
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| ||||| ||||| || || ||||| |||||| ||||||| || || || ||
Sbjct 76823 ATTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 76882
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| || || || || || ||| ||| | || || || || || ||||| ||
Sbjct 76883 AACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACACTCCTTCAAAGTGTCATAAAT 76942
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
|| || ||||||||||| |||| || | ||||| ||||||
Sbjct 76943 CCCTTCAATGCTATCATCTTTCATATTGATCAGAAAGCAGCTA 76985
>seq477
Length=199787
Score = 87.8 bits (96), Expect = 3e-12
Identities = 153/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| || || | |||| || || | |||| | |||| |||||| || | ||| ||
Sbjct 10372 TCCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGGACAATGCC 10313
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| ||||| ||||| || || ||||| |||||| ||||||| || || || ||
Sbjct 10312 ATTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 10253
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| || || || || || ||| ||| | || || || | || ||||| ||
Sbjct 10252 AACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACACTCCTTCAGAGTGTCATAAAT 10193
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
|| || ||||||||||| |||| || | ||||| ||||||
Sbjct 10192 CCCTTCAATGCTATCATCTTTCATATTGATGAGAAAGCAGCTA 10150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717566135589680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |