Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq40 138 1e-27 seq66 118 1e-21 >seq40 Length=1826671 Score = 138 bits (152), Expect = 1e-27 Identities = 567/875 (65%), Gaps = 38/875 (4%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| |||||||| | |||||| || |||||||||||||| || |||| || || || Sbjct 1767080 TTTCTGATATTCCCCAACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTGAAGAGAAATCAA 1767021 Query 13640 TTCCATAAAATCAAATGGATTTATTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 13698 ||||| |||||||||| |||| ||| |||| ||| |||| || ||| | || Sbjct 1767020 CTCCATCCAATCAAATGGGTTTA-CCACACCGTACACCTTACCACACCCAAGTGCAGCTA 1766962 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||||||||||||| ||||||||| || ||| ||| | ||||| ||||| |||| | Sbjct 1766961 ACAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAGTTCATCCCTACCA 1766902 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTA-TA 13817 | ||||| || | || || | ||||| ||| || | ||| || |||| | || Sbjct 1766901 GCTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACCGCTTCTTCCACTA 1766842 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTT------AGATGTTTAAAAATTAAA 13871 | || || |||| | | || | || | || ||| | | || Sbjct 1766841 TTGCCTG-AACTTTCTC--CACACTTAGCTTTTTCTTCAACAAGCTGT----ACAGCAAG 1766789 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| ||||| || ||||| | || | |||||||| || |||||| Sbjct 1766788 CAGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAAT 1766729 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| || || || ||||| | ||| |||| || |||| || || || ||||| Sbjct 1766728 CCGGGCATTAACCCGCGCTTTTTCAGCCAGAATA-TGGAGCAGAAGCTTCCAGAGAAGAA 1766670 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14050 || || ||||| ||| || || || | || ||| | || ||| || | | ||| Sbjct 1766669 AATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCTCCG-TCG- 1766612 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 |||||| ||||| || | ||| || || | | | || || || || || Sbjct 1766611 -ATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGATTGCGCG 1766553 Query 14111 AAATAAAT---ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 || | | ||| || ||| ||| ||||| || || | || | | ||| Sbjct 1766552 GAAGAGGTGGGATTTAAGGTC-GGAGTCTTTG--ATGTAGGTTTCTAAGAGGAGGGAATA 1766496 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--C 14225 |||||| ||||| |||||||| || || || || || || || ||| | || || | Sbjct 1766495 CATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCCTCTGC 1766436 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 ||| || || || |||||| |||| | |||||| || || || ||| Sbjct 1766435 TACC--TGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCAGAG 1766378 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG--TTTTT 14343 || || || || || | |||| | || |||| |||||| || | |||| | ||| Sbjct 1766377 GCGGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATGTTT 1766318 Query 14344 TCCAA---TCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 ||| | ||| | |||| || ||||| ||||| || | ||||| || || Sbjct 1766317 TCCCAGTGGCGGTT--GTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCTT 1766260 Query 14401 CAGCTTTTTTATACATTACCCATATTTCTTTATAT 14435 ||||||| || |||||| |||| |||| | |||| Sbjct 1766259 CAGCTTTCTTGTACATTTCCCAGATTTGTGGATAT 1766225 >seq66 Length=1001823 Score = 118 bits (130), Expect = 1e-21 Identities = 301/449 (67%), Gaps = 18/449 (4%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| |||||||| | |||||| ||||||||||||||||| || |||| || || || Sbjct 953394 TTTCTGATATTCCCCAACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTGAAGAGAGATCAA 953335 Query 13640 TTCCATAAAATCAAATGGATTTATTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 13698 ||||| |||||||||| |||| ||| |||| ||| |||| || || | | Sbjct 953334 CTCCATCCAATCAAATGGGTTTA-CCACACCGTACACCTTACCACACCCAAGCGCAGCCA 953276 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 | ||||| || | |||||||||||| ||| ||| | ||||| ||||| |||| | Sbjct 953275 AAAGCCTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACCA 953216 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTA-TA 13817 | |||||||| | || || | ||||| || || | ||| || |||| || | Sbjct 953215 GCTTTACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACGA 953156 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTT------AGATGTTTAAAAATTAAA 13871 | | || | | |||| | | || | || | || ||| | | || Sbjct 953155 TTGACTGGACT-TTCTC--CACACTTAGTTTCTTCTTCAACAAGCTGT----ACAGCAAG 953103 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || || || ||||| ||||| || || |||| || || |||||||| || |||||| Sbjct 953102 CAGGCGAAGTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAT 953043 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| || || || ||||| | ||| |||| || |||| || ||||| ||||| Sbjct 953042 CCGGGCATTAACCCGCGCTTTTTGAGCCAGAATA-TGGAGCAGAAACTTCCGGAGAAGAA 952984 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTA 14019 || || ||||| ||| || || |||| Sbjct 952983 GATCCCTTCAACGCAAGCGAAAGCAATTA 952955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479258694090800