Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq40 138 1e-27 seq66 107 2e-18 >seq40 Length=1826671 Score = 138 bits (152), Expect = 1e-27 Identities = 561/871 (64%), Gaps = 30/871 (3%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| |||||||| | |||||| || ||||| |||||||| || |||| || || || Sbjct 1767080 TTTCTGATATTCCCCAACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTGAAGAGAAATCAA 1767021 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| ||||| ||| ||| |||| ||| |||| || ||| | || Sbjct 1767020 CTCCATCCAATCAAATGGGTTTACC-ACACCGTACACCTTACCACACCCAAGTGCAGCTA 1766962 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | ||||||||||||| ||||||||| || ||| ||| | ||||| ||||| |||| | Sbjct 1766961 ACAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAGTTCATCCCTACCA 1766902 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 | ||||| || | || || | ||||| ||| || | ||| || || | | | Sbjct 1766901 GCTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACCGCTTCTTCCACTA 1766842 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTT------AGATGTTTAAAAATTAAAC 13660 | || | | | || | | || | || | || ||| | | || | Sbjct 1766841 TTGCCTGA--ACTTTCTCCACACTTAGCTTTTTCTTCAACAAGCTGT----ACAGCAAGC 1766788 Query 13661 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13720 | ||||||||||| ||||| || ||||| | || | |||||||| || ||||||| Sbjct 1766787 AGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAATC 1766728 Query 13721 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAAT 13779 | ||||| || || || ||||| | ||| |||| || ||| ||| ||| || ||||| Sbjct 1766727 CGGGCATTAACCCGCGCTTTTTCAGCCAGAATA-TGGAGCAGAAGCTTCCAGAGAAGAAA 1766669 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 || || ||||| ||| || || || |||| ||| | || ||| || | || Sbjct 1766668 ATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCTCCGT---CG 1766612 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 |||||| ||||| || | ||| || || | | | || || |||||||| | Sbjct 1766611 ATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGATTGCGCGG 1766552 Query 13900 AATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957 || | || || | ||| ||| ||||| || || | || | | ||||| Sbjct 1766551 AAGAGGTGGGATTTAAGGTCGGAGTCTTTG--ATGTAGGTTTCTAAGAGGAGGGAATACA 1766494 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--A 14015 |||| ||||| |||||||| || || || || || || || || | || |||| | Sbjct 1766493 TTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCCTCTGCTA 1766434 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 || || || || |||||| | || | ||||| || || || ||| || Sbjct 1766433 CC--TGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCAGAGGC 1766376 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG--TTTTTTC 14133 || || || || | |||| | || |||| |||||| || | |||| | ||||| Sbjct 1766375 GGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATGTTTTC 1766316 Query 14134 CAATCGGC-TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 | | ||| |||| || ||||| ||||| || | ||||| || || |||| Sbjct 1766315 CCAGTGGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCTTCAGC 1766256 Query 14193 TTTTTTATACATTACCCATATTTCTTTATAT 14223 ||| || |||||| |||| |||| | |||| Sbjct 1766255 TTTCTTGTACATTTCCCAGATTTGTGGATAT 1766225 >seq66 Length=1001823 Score = 107 bits (118), Expect = 2e-18 Identities = 297/449 (66%), Gaps = 16/449 (4%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| |||||||| | |||||| |||||||| |||||||| || |||| || || || Sbjct 953394 TTTCTGATATTCCCCAACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTGAAGAGAGATCAA 953335 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| ||||| ||| ||| |||| ||| |||| || || | | Sbjct 953334 CTCCATCCAATCAAATGGGTTTACC-ACACCGTACACCTTACCACACCCAAGCGCAGCCA 953276 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | | ||||| || | |||||||||||| ||| ||| | ||||| ||||| |||| | Sbjct 953275 AAAGCCTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACCA 953216 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 | |||||||| | || || | ||||| || || | ||| || || | || | Sbjct 953215 GCTTTACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACGA 953156 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTT------AGATGTTTAAAAATTAAAC 13660 | || | | || | | || | || | || ||| | | || | Sbjct 953155 TTGACT--GGACTTTCTCCACACTTAGTTTCTTCTTCAACAAGCTGT----ACAGCAAGC 953102 Query 13661 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13720 | || || ||||| ||||| || || |||| || || |||||||| || ||||||| Sbjct 953101 AGGCGAAGTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAATC 953042 Query 13721 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAAT 13779 | ||||| || || || ||||| | ||| |||| || ||| ||| |||||| ||||| Sbjct 953041 CGGGCATTAACCCGCGCTTTTTGAGCCAGAATA-TGGAGCAGAAACTTCCGGAGAAGAAG 952983 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAG 13808 || || ||||| ||| || || ||||| Sbjct 952982 ATCCCTTCAACGCAAGCGAAAGCAATTAG 952954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478120608541680