Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq40 170 3e-37 seq66 165 1e-35 >seq40 Length=1826671 Score = 170 bits (188), Expect = 3e-37 Identities = 407/609 (67%), Gaps = 11/609 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || || ||||| ||||| || || ||||| | || || ||||| || | Sbjct 1766796 ACAGCAAGCAGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGA 1766737 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 | || | ||||||||||| || |||||||| ||||| ||||| || ||| | | | ||| Sbjct 1766736 AGGTTAATCCGGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGA-GCAGAAGCTTCCA 1766678 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCA 42232 || ||||| || ||||| || || || ||||||||||| || | | | || Sbjct 1766677 GAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCT 1766618 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | ||| ||||| | |||||||| || ||||| || ||||| || || || || Sbjct 1766617 CCGTCG---ATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCG 1766561 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || || ||||| | | ||| | ||||| | || || || | | || Sbjct 1766560 ATTGCGCGGAAGAGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGG 1766501 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||||||||| || || |||||||||||||| || || || |||||||| | ||| Sbjct 1766500 GAATACATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCC 1766441 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || | ||||| || ||| | |||| | | || | ||||||| || || |||||| Sbjct 1766440 TCTGCTACCTGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCA 1766381 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT- 42529 ||| || || || || | | || | || || | || ||||| ||||| || Sbjct 1766380 GAGGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATG 1766321 Query 42530 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT 42589 || | ||| | | | || | || | ||| |||||||| | ||||| || || ||| Sbjct 1766320 TTTTCCCAGTGGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCT 1766261 Query 42590 TCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTA 42649 || || || || ||||| | |||||| | |||||| |||||||| ||| |||||| Sbjct 1766260 TCAGCTTTCTTGTACATTTCCCAGATTTGTGGATATTTGATTGGGAACATACAGAATCTA 1766201 Query 42650 TTTGGATTT 42658 | ||| ||| Sbjct 1766200 TCTGGGTTT 1766192 >seq66 Length=1001823 Score = 165 bits (182), Expect = 1e-35 Identities = 579/897 (65%), Gaps = 19/897 (2%) Strand=Plus/Minus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || ||||| || || | ||||| || || |||||||| |||| | || || Sbjct 953394 TTTCTGATATTCCCCAACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTGAAGAGAGATCAA 953335 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| ||||||| || || ||| || | || | | || | ||| | Sbjct 953334 CTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACACCCAAGCGCAGCCAA 953275 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 | |||||||||| || || ||||| |||||| ||||| ||||| |||| || Sbjct 953274 AAGCCTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACCAG 953215 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 || || || || | | || | ||||| | || || | ||||| ||| || || Sbjct 953214 CTTTACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACGAT 953155 Query 42013 AGATCTTACTGTTTCTTCACTCGGTGGATAC---AATAAA-TGTTTAAACATCAAACATG 42068 || ||| | || |||| || | | || || ||| ||| ||| || | Sbjct 953154 TGACTGGACTTTCTCCACACTTAGTTTCTTCTTCAACAAGCTGT----ACAGCAAGCAGG 953099 Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128 |||| || ||||| || || || |||| || | ||||| || || || | ||||| Sbjct 953098 CGAAGTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAATCCGG 953039 Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATT 42187 |||||| || |||||||| ||||| ||||| || ||| || ||| || |||||||| Sbjct 953038 GCATTAACCCGCGCTTTTTGAGCCAGAATATGGA-GCAGAAACTTCCGGAGAAGAAGATC 952980 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATC 42244 ||||| || || || ||||| || ||||| || | | | || | |||| ||| Sbjct 952979 CCTTCAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCGCCGTCA---ATC 952923 Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304 || | ||||| || || ||||| || || || || || || || || || ||| Sbjct 952922 CATCGGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATTGCTCGGAAG 952863 Query 42305 AGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364 || | | ||| | ||||| | || || || | | ||| |||||||| Sbjct 952862 AGGTGGGATTTAAGCTCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAGTACATTTCG 952803 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 || || |||||||| || || || || || |||||||| | ||||| | |||||| Sbjct 952802 GAGTGGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCTCAGCAACCTGG 952743 Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 || ||| | |||| | || | |||||| ||||| ||||| ||| || || Sbjct 952742 ACCTCTTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGGAGGCGGCGAAG 952683 Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT---TATTCCAATCA 42541 || || | | ||| | ||||| | || ||||| | || | | | ||||| | Sbjct 952682 AAGGCGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGGTTTCCCAATGA 952623 Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 | | |||| || | ||||||||||| | ||||| || || ||||| ||||| || Sbjct 952622 CGGTTGTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTTCAGCCTTCTTG 952563 Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||||| | |||||| | | |||| |||||||| ||| ||||||| ||| ||| Sbjct 952562 TACATCTCCCAGATTTGTGGGTATTTGATTGGGAACATACAGAATCTATCTGGGTTT 952506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670482641299120