Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq329 93.3 4e-14 seq37 86.0 6e-12 seq909 84.2 2e-11 >seq329 Length=298387 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || | || ||| | ||||||||| | || ||||| ||||| ||||||||||| Sbjct 180083 CCACCCCTTAGACGAAGAACTAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCA 180024 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || |||||||||||||||||| |||| || | || ||||| ||||| Sbjct 180023 AGGGTTCTTCCATCCTCGAGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGGAGGA 179964 Query 143078 ATGCCTTCTTTGTC 143091 || ||||||||||| Sbjct 179963 ATCCCTTCTTTGTC 179950 >seq37 Length=1785839 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 142953 CATGG--CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTA 143010 ||||| || || || | ||| | || || || | |||||||| || || |||||||| Sbjct 885935 CATGGTCCCACCACGAAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTA 885876 Query 143011 ATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 143070 ||| | ||| || ||||| | ||||| || || |||| || ||||| || || Sbjct 885875 GTCGGCAAGTGTTCTTCCATCTTCCAACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTC 885816 Query 143071 GGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGG 143130 || || |||||||||||||| || || ||| | | || | ||||| | || Sbjct 885815 CGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGGA 885756 Query 143131 TTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||| | || | || || ||||| | ||||| ||||| || ||||| Sbjct 885755 TTCTACTTCTAGGGTTATGGTTTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 885702 >seq909 Length=350832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||| | ||| | |||| ||| ||||| ||||| |||||||||||| | || | Sbjct 176287 ACGAAGAACCAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCC 176346 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 |||||| || ||||| || || |||| ||||||||||| || || || |||||||| || Sbjct 176347 GTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTT 176406 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || || ||| | | || | || || | || ||| || || | || | Sbjct 176407 GTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTAT 176466 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || || | ||||| ||||| || ||||| Sbjct 176467 GGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCAT 176502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506518400487840