Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq40 152 8e-32 seq66 141 1e-28 >seq40 Length=1826671 Score = 152 bits (168), Expect = 8e-32 Identities = 391/583 (67%), Gaps = 13/583 (2%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||| |||| | || |||||||||||||| || ||| | |||||||| | Sbjct 1766212 TGTTCCCAATCAAATATCCACAAATCTGGGAAATGTACAAGAAAGCTGAAGCCTCCTTCT 1766271 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||||| |||||||| || ||||| | | ||||| | | || | Sbjct 1766272 GGACCGCGGAAGAAGTCGATCTCTCAGAGGACAACCGCCACTGGGAAAACATCCTCACCG 1766331 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 |||| | | || || | ||||| | |||||||| |||| ||| || || |||| Sbjct 1766332 CCGACGAGCAACACTTCATCACCCACATCCTCGCCTTCTTCGCCGCCTCTGACGGCATCG 1766391 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTG 125233 || ||| ||||| | ||||| |||| | ||| | |||||| | || | Sbjct 1766392 TCCTCGAAAATCTCGCCGGAAGATTCATGAAAGACGT--CCAGGTAGCAGAGGCG-CGCG 1766448 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||||||| ||||| ||| | |||||||||||||| || || Sbjct 1766449 CCTTCTACGGCTTCCAAATCGCCATTGAAAACATCCACTCGGAAATGTATTCCCTCCTCT 1766508 Query 125293 TTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 | || | ||||| || |||| | | |||| | ||||| ||||||||| || Sbjct 1766509 TAGAAACCTACATCAAAGACTCCG-ACCTTAAATCCCACCTCTTCCGCGCAATCGAGACC 1766567 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 | || | | | || || || | |||| | || |||||||| | || || Sbjct 1766568 ATCCCCTGTGTGAAGAAGAAAGCAGATTGGGCCCTCCGATGGATCGACG--GAGCAG-AA 1766624 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG- 125470 || | |||||| ||||| | || ||||| || || || || ||||| || || || Sbjct 1766625 TCCTTCGCCGAAAGACTTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGC 1766684 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || ||| |||| || ||||| || |||||||| | ||||||||| | || | || Sbjct 1766685 TTCTGC-TCCATATTCTGGCTGAAAAAGCGCGGGTTAATGCCCGGATTAACCTTCTCAAA 1766743 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| ||||| || || || || || |||||||| |||||| Sbjct 1766744 CGAGTTGATATCGCGTGATGAAGGGCTTCACTGTGATTTTGCC 1766786 >seq66 Length=1001823 Score = 141 bits (156), Expect = 1e-28 Identities = 391/586 (67%), Gaps = 19/586 (3%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||| || | | || ||||| |||||||| |||||| | |||||||| | Sbjct 952526 TGTTCCCAATCAAATACCCACAAATCTGGGAGATGTACAAGAAGGCTGAAGCCTCCTTCT 952585 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGAC--CTGTACGATTGGGAGACTCGTTTGAC 125113 |||| | ||||| || || || || | ||| | || ||||||| || | || Sbjct 952586 GGACAGCGGAAGAAGTAGACCTCTCACAAGACAACCGTC--ATTGGGAAACCGCGCTCAC 952643 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 | |||| | | ||||| | || || | |||||||| |||| |||||| || || Sbjct 952644 CGCCGACGAGCAACACTTTATCACCCATATCCTCGCCTTCTTCGCCGCCTCCGACGGCAT 952703 Query 125174 CGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTC 125230 ||| || ||||| | | || ||||| ||||| | ||| || | |||| | | Sbjct 952704 AGTCCTAGAAAATCTCGCCGGCA-GATTCATGAAAGAGGT--CCAGGTTGCTGAGGCG-C 952759 Query 125231 GTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | || || ||||| |||||||| || || ||| | ||||| |||||||||||| | Sbjct 952760 GCGCCTTCTACGGGTTCCAAATAGCAATCGAAAACATCCACTCCGAAATGTACTCTCTCC 952819 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349 | | || | ||||| || | | | |||| | ||||| |||||||| | Sbjct 952820 TCCTAGAAACCTACATCAAAGACTCAGAGCTTAAATCCCACCTCTTCCGAGCAATCGAGA 952879 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACG-ACAAG 125408 | | || | | || || || | |||| | || ||||| || | || | || Sbjct 952880 CCATCCCCTGCGTGAAGAAGAAAGCGGAGTGGGCCCTCCGATGGATTGACGGCGCAGAAT 952939 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 ||| | |||| || || | || ||||| ||| || || |||||||| || || Sbjct 952940 GCTTTG----CCGAGAGGCTAATTGCTTTCGCTTGCGTTGAAGGGATCTTCTTCTCCGGA 952995 Query 125469 AGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 ||||| ||| |||| || |||||||| |||||||| | ||||||||| | || | Sbjct 952996 AGTTTCTGCT-CCATATTCTGGCTCAAAAAGCGCGGGTTAATGCCCGGATTAACCTTCTC 953054 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | ||||| |||||||| || || ||||||||||| ||| Sbjct 953055 AAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGACTTCGCC 953100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740334240311120