Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1435 116 3e-21 seq909 116 3e-21 seq329 109 4e-19 seq865 95.1 9e-15 seq37 95.1 9e-15 seq1099 84.2 2e-11 >seq1435 Length=543809 Score = 116 bits (128), Expect = 3e-21 Identities = 158/219 (72%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || |||||||||||| || |||| | || ||| Sbjct 91935 ACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGTGTTCTTCCATCCTCT 91876 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || ||| | |||| ||||| ||||| ||| ||||| |||||||| Sbjct 91875 AATTGCTTCCCGGCGAAGATCAGGCGTTGCTGGTCCGGTGGGATTCCCTCTTTGTCTTGG 91816 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || || | || || |||||| ||| || |||| ||| |||||||| Sbjct 91815 ATCTTGGCTTTGACGTTGTCGATTGTATCGGAGGATTCCACTTCTAGGGTTATGGTTTTC 91756 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 || || || ||||| || ||||||||||| | ||| ||| Sbjct 91755 CCAGTTAGGGTTTTCACGAAAATTTGCAT-TGTGACAAT 91718 >seq909 Length=350832 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| |||||||||||| ||| ||| ||||||| | ||| Sbjct 176300 TGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGT 176359 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | |||||| ||||| ||| || ||||| ||||| || ||| Sbjct 176360 TTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTG 176419 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || ||||||||| ||| || |||| ||| |||||||| || || Sbjct 176420 GCTTTGACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTT 176479 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 || ||||| || ||||| ||||| ||| Sbjct 176480 AGGGTTTTCACGAAAATCTGCATTTTT 176506 >seq329 Length=298387 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||||||||| || || || || ||||| ||||||||||| || |||| | || || Sbjct 180066 AACTAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCAAGGGTTCTTCCATCCTC 180007 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| ||||| | || | | ||||| || ||||| ||||||||||| Sbjct 180006 GAGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTG 179947 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||| ||| | || || ||||| | | ||||| |||| || || ||||| Sbjct 179946 GATCTTGGTCTTAACATTGTCAATTGTATCAGAACTCTCTACTTCTAGAGTGATTGTTTT 179887 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || ||||| |||||||| Sbjct 179886 CCCTGTAAGTGTCTTCACAAAGATTTGCAT 179857 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || ||||| || || || || ||||| || || || || Sbjct 180311 CCACCTCTCAAACGAAGTACCAAATGCAGAGTAGACTCCTTTTGAATATTATAGTCTGCA 180252 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | || ||||| ||||| ||||| | || | | |||||| || || | Sbjct 180251 AGAGTTCTACCATCCTCTAACTGTTTCCCAGCAAAGATGAGTCTTTGTTGATCAGGTGCA 180192 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || ||| ||| |||| ||| |||| || || || | |||| || Sbjct 180191 ATACCTTCTTTATCGTGAATCTTGGTCTTAACATTTTCAATCGTGTCAGAAGTTTCAACC 180132 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||||| ||||| || || || || ||||| || ||||| Sbjct 180131 TCAAGAGTAATGGTCTTACCAGTAAGGGTCTTAACAAAGATCTGCAT 180085 >seq865 Length=406355 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||||||||| || || || |||||||| ||| ||| ||| | ||||| Sbjct 6577 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCATCTTCA 6636 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | ||||| | || ||||| ||||| ||||| || || Sbjct 6637 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 6696 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||| ||| |||| || || | ||| ||||| || Sbjct 6697 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTC 6756 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| || ||||| || |||||| Sbjct 6757 CCTGTTAGAGTCTTCACAAAGATCTGCATA 6786 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | || ||||||||||| || || ||||| || |||||||| Sbjct 5875 CCTCCCCTCAAACGAAGCACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 5934 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | ||| | ||||| | || || || || | |||| | || ||||| || Sbjct 5935 AGAGTCCTCCCATCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 5994 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| ||| | || ||||| || | | || || Sbjct 5995 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACC 6054 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || || |||| || || || ||||| |||||| Sbjct 6055 TCCAAGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCATA 6102 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | || | |||||||||||| || || || |||||||| || Sbjct 6331 CCTCCCCTCAAACGGAGCACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCC 6390 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | || || || || | ||||| | || ||||| || Sbjct 6391 AAAGTACGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 6450 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || |||||| |||||| | || || || ||| | || || Sbjct 6451 ATTCCTTCCTTATCTTGGATTTTGGCCTTTACGTTGTCAATAGTGTCGGAGCTCTCCACC 6510 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| || ||||| ||||| || |||||||| |||||| Sbjct 6511 TCCAAGGTGATGGTCTTTCCTGTAAGAGTCTTAACAAAAATCTGCATA 6558 >seq37 Length=1785839 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || || || |||||||| ||| || |||| | ||||| Sbjct 885910 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTTCCATCTTCC 885851 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||| || ||| | || | ||||||||||| ||| || ||||||||||| Sbjct 885850 AACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCTTGG 885791 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || || | || || || ||| |||||| |||| ||| |||||||| Sbjct 885790 ATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGGGTTATGGTTTTT 885731 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || ||||| || || || ||||| || Sbjct 885730 CCGGTTAGGGTTTTGACGAAGATCTGCATTTT 885699 >seq1099 Length=206994 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || || || ||||||||||| || | | | || || | ||| Sbjct 75104 ATGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCGAGGGTACGTCCATCCTCAAGTTG 75045 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || || | |||| |||||| ||||| |||||||| ||||| || || || Sbjct 75044 CTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTATCTTGGATCTT 74985 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||| ||| | || || || ||| | | || || || | || || ||||| || || Sbjct 74984 GGTCTTAACATTGTCAATAGTGTCGGAACTCTCAACCTCCAGAGTTATAGTTTTTCCGGT 74925 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || |||||||| Sbjct 74924 AAGAGTCTTGACGAAGATTTGCAT 74901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361833746914542