Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1435 87.8 1e-12 seq810 84.2 2e-11 >seq1435 Length=543809 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || || ||||| ||||| |||||||| || | |||| | | ||||| Sbjct 91936 CACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGTGTTCTTCCATCCTC 91877 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 | || || || || | || || | ||||| ||| || | ||||||||||| Sbjct 91876 TAATTGCTTCCCGGCGAAGATCAGGCGTTGCTGGTCCGGTGGGATTCCCTCTTTGTCTTG 91817 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||| || | | ||| |||||| | ||| ||| | ||| |||||||| Sbjct 91816 GATCTTGGCTTTGACGTTGTCGATTGTATCGGAGGATTCCACTTCTAGGGTTATGGTTTT 91757 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||| ||||| || |||||||||||| Sbjct 91756 CCCAGTTAGGGTTTTCACGAAAATTTGCATT 91726 >seq810 Length=562993 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | ||| | | |||| ||| | |||||||| || || ||||||||||||| Sbjct 115076 TTCCTCCCCTCAAACGAAGAACCAAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCG 115135 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||||||||| || || || |||| | |||||||| || || Sbjct 115136 CAAGAGTCCTCCCATCCTCCAGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGG 115195 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||| ||||| ||| ||| || || | | ||| || || ||| Sbjct 115196 GAATGCCCTCCTTGTCTTGAATCTTCGCCTTAACATTGTCGATGGTGTCTGAGCTCTCAA 115255 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || || || ||||| ||||| ||||| Sbjct 115256 CCTCCAACGTGATGGTCTTTCCCGTCAAGGTCTTGACGAAAATCTGCAT 115304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414177372949228