Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq40 141 8e-29 >seq40 Length=1826671 Score = 141 bits (156), Expect = 8e-29 Identities = 487/750 (65%), Gaps = 17/750 (2%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| ||| |||||||| | |||||| || ||||| ||||| || || ||| Sbjct 1767094 GACATAACAGAAGCTTTCTGATATTCCCCAACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 1767035 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | | ||||| ||||| |||| || || ||| | || || || |||| Sbjct 1767034 TGAAGAGAAATCAACTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACAC 1766975 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || | | | ||||||||| |||||||||||||| |||||||| |||| | |||||| Sbjct 1766974 CCAAGTGCAGCTAACAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAG 1766915 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 ||||| |||| | ||||| |||| | || || | || | ||| || | || Sbjct 1766914 TTCATCCCTACCAGCTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACC 1766855 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGAT---AGATGCTT 13140 ||||| ||||| | || | || ||||| | | || ||| | | | || | Sbjct 1766854 GCTTCTTCCACTAT-TGCCTGA--ACTTTCTCCACACTTAGCTTTTTCTTCAACAAGC-T 1766799 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 ||| || || |||||||||||||| | |||||||| | ||| | ||||||||| Sbjct 1766798 GTACAGCAAGCAGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGA 1766739 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAAC 13259 || |||| || ||||| | ||| || ||||| | ||| ||||| | |||| || | Sbjct 1766738 GAAGGTTAATCCGGGCATTAACCCGCGCTTTTTCAGCCAGAATAT-GGAGCAGAAGCTTC 1766680 Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTAT 13319 | || || || || |||||||| || || || || | ||||| | | | Sbjct 1766679 CAGAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGG-----A 1766625 Query 13320 TTTTACTC--TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATT 13377 || | ||| || ||||| |||||| | |||||| | || || ||| || | Sbjct 1766624 TTCTGCTCCGTCGATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGT 1766565 Query 13378 TTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 || |||||| || | | ||| | |||| || || || |||| | Sbjct 1766564 CTCGATTGCGCGGAAGAGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAG 1766505 Query 13438 TAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497 | | ||||||||| || || || ||||| || || |||||||| || || || | Sbjct 1766504 GAGGGAATACATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCG 1766445 Query 13498 AGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCC 13557 ||||||| |||||| || || |||||| | || | |||||| || || || Sbjct 1766444 CGCCTCTGCTACCTGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCC 1766385 Query 13558 GTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 |||| || || || || || || ||||| Sbjct 1766384 GTCAGAGGCGGCGAAGAAGGCGAGGATGTG 1766355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430571321175324