Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq329 185 2e-41 seq20 145 2e-29 seq1099 143 6e-29 seq909 140 7e-28 seq37 131 4e-25 seq865 127 5e-24 seq1663 125 2e-23 seq810 120 7e-22 seq122 86.0 1e-11 >seq329 Length=298387 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | |||||| | ||| | ||||| || || |||||||||||||| Sbjct 180314 ATCCCACCTCTCAAACGAAGTACCAAATGCAGAGTAGACTCCTTTTGAATATTATAGTCT 180255 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||||||||| || |||| ||||| |||||||| || || || ||||||||||| Sbjct 180254 GCAAGAGTTCTACCATCCTCTAACTGTTTCCCAGCAAAGATGAGTCTTTGTTGATCAGGT 180195 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 | || ||||||||||| |||||||| | || |||||||| | || || || ||| Sbjct 180194 GCAATACCTTCTTTATCGTGAATCTTGGTCTTAACATTTTCAATCGTGTCAGAAGTTTCA 180135 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| |||||||||||||| || || ||||| |||||||| Sbjct 180134 ACCTCAAGAGTAATGGTCTTACCAGTAAGGGTCTTAACAAAGATCTGCAT 180085 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || ||||| | ||| |||| ||| | || ||||| || ||||| || || || Sbjct 180086 ATCCCACCCCTTAGACGAAGAACTAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCT 180027 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || ||||| || || || |||||||| |||||||| ||||||||||||||||| ||| Sbjct 180026 GCAAGGGTTCTTCCATCCTCGAGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGGA 179967 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| | || ||||| || | ||||| | ||| Sbjct 179966 GGAATCCCTTCTTTGTCTTGGATCTTGGTCTTAACATTGTCAATTGTATCAGAACTCTCT 179907 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| || ||||| || ||||| Sbjct 179906 ACTTCTAGAGTGATTGTTTTCCCTGTAAGTGTCTTCACAAAGATTTGCAT 179857 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 ||||| | || | ||| || ||||| | ||||| || |||||||||||||| || | Sbjct 180539 CCCCCACGCAGACGAAGAACAAGATGAAGAGTAGACTCCTTCTGAATATTATAATCTGCC 180480 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||| || || || | ||| || |||||||| || | |||||| ||||| || || Sbjct 180479 AAAGTTCTCCCATCCTCCAATTGCTTCCCAGCAAAGATAATCCTCTGCTGATCTGGTGGG 180420 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || ||||||||||||||||| | || ||||| || | ||||| | ||| || Sbjct 180419 ATACCCTCTTTATCCTGAATCTTAGTCTTAACATTATCAATTGTATCTGAACTTTCCACT 180360 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 180359 TCCAAAGTAATCGTCTTTCCAGTAAGTGTCTTCACAAAGATTTGCAT 180313 >seq20 Length=1286389 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || || || | ||| || || || | || ||||| ||||| || || ||||| | | Sbjct 250563 CCACCCCTAAGACGAAGCACCAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCT 250504 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||| |||||||| || || ||||| || || || || | ||| || || ||||| Sbjct 250503 AGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGG 250444 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| || ||||| || || ||||| || | ||||||| | ||| ||| Sbjct 250443 ATGCCTTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATGGTATCGGAGGATTCAACC 250384 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || || || || || ||||| || || ||||||||||| Sbjct 250383 TCTAGGGTTATGGTTTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTT 250334 >seq1099 Length=206994 Score = 143 bits (158), Expect = 6e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || ||||| | ||| || ||||| | || || || ||||| || || || || Sbjct 75358 ATTCCACCCCTTAGTCGAAGCACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCT 75299 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | || ||||| || || ||||||||||| || | |||||| ||||| || Sbjct 75298 GCAAGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAATATCAACCTCTGCTGATCTGGG 75239 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||||||||| || || ||||| || | || || || | || Sbjct 75238 GGAATCCCCTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATTGTGTC-TGAGCTCTC 75180 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| ||||| | || || |||||||||||||| Sbjct 75179 AACCTCCAGAGTAATAGTCTTCCCAGTCAAAGTCTTGACAAATATCTGCAT 75129 Score = 131 bits (144), Expect = 4e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || || || || || | ||||| || || || || | ||| |||||| Sbjct 75553 GTAGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTCCCATCCTCCAATTGCTTTCCA 75494 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||| |||||| ||||| || || ||||| || ||||||||||| || || || Sbjct 75493 GCAAAGATTAACCTCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATTTTAGCCTTG 75434 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || || | || ||||| || ||||||||||| ||||| | || Sbjct 75433 ACATTGTCAATGGTGTCTG-AGCTCTCAACCTCCAGAGTAATAGTCTTCCCAGTCAAGGT 75375 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 75374 CTTGACGAAAATCTGCATT 75356 >seq909 Length=350832 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || || || | ||| || || || | ||| ||||| || || || || || || | | Sbjct 176276 CCACCCCTAAGACGAAGAACCAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGCT 176335 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||| |||||||| || |||||||| || || || || | || || || || || Sbjct 176336 AGGGTTCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGGG 176395 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || ||||| ||||| ||||| || | ||||||| | ||| ||| Sbjct 176396 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCAACC 176455 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || || ||||| || ||||| || || ||||||||||| Sbjct 176456 TCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATTTT 176505 >seq37 Length=1785839 Score = 131 bits (144), Expect = 4e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || ||||| | || ||||| || ||||| | |||||||| Sbjct 885898 GTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTTCCATCTTCCAACTGTTTTCCG 885839 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||| || || || || |||||||| || || ||||| ||||| Sbjct 885838 GCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTTG 885779 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| | |||||| ||||| || || || || || || || ||| Sbjct 885778 ACGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGGGTTATGGTTTTTCCGGTTAGGGTT 885719 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || || || ||||||||||||| Sbjct 885718 TTGACGAAGATCTGCATTTTGT 885697 >seq865 Length=406355 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || | | ||| || | ||| | ||||| || || || ||||| || || Sbjct 5872 ATTCCTCCCCTCAAACGAAGCACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCC 5931 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| || || ||||| || || ||||| ||||| || |||||||| || || || Sbjct 5932 GCAAGAGTCCTCCCATCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGG 5991 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || | || Sbjct 5992 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCA 6051 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||||||||| ||||| | || || || || |||||||| Sbjct 6052 ACCTCCAAGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 6101 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || ||||| || || ||||||| | ||| | || ||| Sbjct 6118 AGAACCAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCT 6177 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || |||||||| | |||||| || || || || || ||||| || || Sbjct 6178 TCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 6237 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | ||| || | || ||||| | ||||||||| Sbjct 6238 TGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTC 6297 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | ||||| || || |||||||| Sbjct 6298 TTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 6329 Score = 118 bits (130), Expect = 2e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || |||| | || | ||| || || |||||||| ||| Sbjct 5677 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATCCTCAAGTTGTTTCCCA 5736 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || || || || || || || || ||||| ||||| || || Sbjct 5737 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTC 5796 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || | || | || ||||| || || || ||||||||||| | || Sbjct 5797 ACATTATCAATCGTGTC-CGAGCTCTCAACCTCCAGGGTGATGGTCTTACCAGTCAAGGT 5855 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 5856 CTTCACAAAAATCTGCATT 5874 >seq1663 Length=237253 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||| || || ||||| | || || | ||||| Sbjct 10423 AAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTC 10364 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || |||||||| || || || || | ||| || || || || || ||||| || || Sbjct 10363 TTCAAGCTGTTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTC 10304 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| ||||| ||||| || | || || | |||||||||||| || || || Sbjct 10303 TTGGATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGT 10244 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565 || || || || ||||| || || ||||||||||| || Sbjct 10243 TTTCCCGGTTAGGGTTTTCACGAAGATCTGCATTTTTTG 10205 >seq810 Length=562993 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||||| | ||| | || || || ||||| || || Sbjct 115336 GTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCCTCAAGTTGCTTACCC 115395 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | |||||| || || || || || || || ||||||||||| ||||| || Sbjct 115396 GCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATTTTTGCCTTG 115455 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| ||| || | || ||||||| || || ||||| || || || || Sbjct 115456 ACATTGTCAATGGTGTCG-GAGCTCTCCACCTCTAAGGTGATGGTCTTTCCGGTGAGGGT 115514 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 115515 CTTGACAAAAATCTGCAT 115532 >seq122 Length=796376 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| | |||| || | |||||| | | |||| | ||| Sbjct 748988 AAGGACAAGGTGGAGGGTAGACACCTTCTAGATGTCATAGTCGGCGACTGTTCGTCGGTC 748929 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | |||||| | | || || || | || || || || || |||||||| ||||| Sbjct 748928 TTGAACCTGTTTTTCGACGAAGATAAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTATC 748869 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| ||||| ||||| || | || || | |||||||||||| || || || Sbjct 748868 TTGGATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGT 748809 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || ||||| || || | | ||||||| Sbjct 748808 TTTCCCGGTTAGAGTTTTCACGAAGGTATACATTTTG 748772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150243856123496