Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq810 104 2e-17 seq909 91.5 1e-13 seq20 87.8 2e-12 >seq810 Length=562993 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| | ||||| || |||||| || |||||||| |||||| Sbjct 115306 CCTCCCCTCAAACGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 115365 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| || |||||||| || |||| || | |||||| || || Sbjct 115366 AAAGTACGGCCATCCTCAAGTTGCTTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGA 115425 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||||| ||| |||||| ||||| | | ||||| |||| |||| | Sbjct 115426 ATACCCTCCTTATCCTGAATTTTTGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACC 115485 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || |||||||| || || |||||||||||||| Sbjct 115486 TCTAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAAATCTGCAT 115532 >seq909 Length=350832 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 |||||||| |||||||| ||||||||||| || | ||| |||| || ||||| Sbjct 176300 TGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGT 176359 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||| ||||| || || | | ||||||||| || || Sbjct 176360 TTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTG 176419 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 |||| | | |||||||||| || || ||| | ||||||||||| || || Sbjct 176420 GCTTTGACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTT 176479 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| ||||||||||| Sbjct 176480 AGGGTTTTCACGAAAATCTGCAT 176502 >seq20 Length=1286389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || || | ||| |||| || |||||||| ||| || | Sbjct 250527 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAG 250468 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| || || | | |||||| || || || ||||| | Sbjct 250467 ATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATCTTGGCCTTGACATTG 250408 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | |||||||||| || || ||| | ||||||||||| || || || |||||||| Sbjct 250407 TCAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCCGTTAGGGTTTTCACG 250348 Query 48716 AAAATCTGCAT 48726 ||||||||||| Sbjct 250347 AAAATCTGCAT 250337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420849402970262