Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1816 116 2e-21 seq12 116 2e-21 seq952 114 7e-21 seq295 113 2e-20 seq2421 111 8e-20 seq777 111 8e-20 seq2447 109 3e-19 seq769 109 3e-19 seq261 109 3e-19 seq1408 107 1e-18 seq567 107 1e-18 seq28 107 1e-18 seq3618 105 3e-18 seq71 105 3e-18 seq31 105 3e-18 seq1555 104 1e-17 seq276 102 4e-17 seq2854 86.0 3e-12 seq1437 82.4 4e-11 >seq1816 Length=169307 Score = 116 bits (128), Expect = 2e-21 Identities = 79/88 (90%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || |||||| ||||||||||||| | || |||||||| ||||||| ||||||||||||| Sbjct 26847 ATTAAAAAT-AAATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACC 26789 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 26788 ACGCTCTAACCAACTGAGCTAATGGGCC 26761 Score = 111 bits (122), Expect = 8e-20 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| ||| |||||||||| | || |||||||| ||||||| ||||||||||||| ||||| Sbjct 25390 AAAACAAGTTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCT 25331 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || |||||||||||||||||||| Sbjct 25330 CTAACCAACTGAGCTAATGGGCC 25308 >seq12 Length=1618374 Score = 116 bits (128), Expect = 2e-21 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| |||||||||||||| | | |||||||| ||||||||||||||||||||||||||| Sbjct 751637 AAAACAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCT 751578 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || |||| ||||||||||||||| Sbjct 751577 CTAACCAGCTGAGCTAATGGGCC 751555 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 752103 AAAAA--AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 752046 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| ||||||||||||||| Sbjct 752045 CTCTAACCAGCTGAGCTAATGGGCC 752021 >seq952 Length=317169 Score = 114 bits (126), Expect = 7e-21 Identities = 73/79 (92%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||| | Sbjct 85178 AAATGTGGCCCATGCAGGGATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 85119 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| Sbjct 85118 CCAGCTGAGCTAATGGGCC 85100 >seq295 Length=338627 Score = 113 bits (124), Expect = 2e-20 Identities = 81/93 (87%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| |||||| |||||||||||| | || |||||||| ||||||| ||||||||| Sbjct 112817 AAATAAGCAAAAAT--AATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTA 112760 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| |||||||||||||||||||| Sbjct 112759 GCACCACGCTCTAACCAACTGAGCTAATGGGCC 112727 >seq2421 Length=68612 Score = 111 bits (122), Expect = 8e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 13562 AAAAACAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 13621 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| ||||||||||||||| Sbjct 13622 CTCTAACCAGCTGAGCTAATGGGCC 13646 >seq777 Length=685684 Score = 111 bits (122), Expect = 8e-20 Identities = 83/97 (86%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || |||||| || ||||||||| | ||||||||||| |||||| |||||||||| Sbjct 674959 AATGAACAAAAAAACAG--TGGCCCATGCAGGGATCGAACCTGCGACCTCCGCGTTATTA 674902 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||| |||||| |||| ||||||||||||||| ||| Sbjct 674901 GCACGGCGCTCTAACCAGCTGAGCTAATGGGCCTTCG 674865 >seq2447 Length=65405 Score = 109 bits (120), Expect = 3e-19 Identities = 79/92 (86%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||| |||||| ||||||||| | || |||||||| ||||||| |||||||||| Sbjct 3518 ATAAAAGATCAAAAAACGTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAG 3577 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||| |||||||||||||||||||| Sbjct 3578 CACCACGCTCTAACCAACTGAGCTAATGGGCC 3609 >seq769 Length=683714 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| || | | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 162430 AATAAACAAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 162371 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 162370 GACGCTCTAACCAGCTGAGCTAATGGGCC 162342 >seq261 Length=371131 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | || |||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 194575 AATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 194634 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 194635 AACTGAGCTAATGGGCC 194651 Score = 107 bits (118), Expect = 1e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | || |||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 194260 TTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 194319 Query 11515 CTGAGCTAATGGGCCGTCGACGA 11537 ||||||||||||||| | | ||| Sbjct 194320 CTGAGCTAATGGGCCTTTGTCGA 194342 Score = 105 bits (116), Expect = 3e-18 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | ||||||||| | || |||||||| ||||||| ||||||||||||| ||| Sbjct 173590 AAAAATGAGTATGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACG 173649 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 173650 CTCTAACCAACTGAGCTAATGGGCC 173674 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | || |||||||| ||||||| ||||||||||||| || Sbjct 194405 AAAAAATATA--TGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCAC 194462 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 194463 GCTCTAACCAACTGAGCTAATGGGCC 194488 >seq1408 Length=664912 Score = 107 bits (118), Expect = 1e-18 Identities = 83/98 (85%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||| | |||| ||||||||| | || |||||||| ||||||| |||||||||||| Sbjct 525923 AATAAACATAAAAATGTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCA 525982 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 | ||||||| |||||||||||||||||||| | || || Sbjct 525983 CCACGCTCTAACCAACTGAGCTAATGGGCCTTTGATGA 526020 >seq567 Length=160149 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | || |||||||| ||||||| ||||||||||||| ||||||| || Sbjct 24135 AAAATGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 24076 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 24075 CAACTGAGCTAATGGGCC 24058 >seq28 Length=1144075 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| |||||| | ||||||||| | || |||||||| ||||||| ||||||||||||| Sbjct 969881 AATGAAAAATAA---TGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCAC 969937 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 969938 CACGCTCTAACCAACTGAGCTAATGGGCC 969966 >seq3618 Length=20896 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||| ||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 16261 AATTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 16202 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 16201 AACTGAGCTAATAGGCC 16185 >seq71 Length=976879 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| ||| || ||||||||| | || |||||||| ||||||| ||||||||||||| || Sbjct 367280 AAAGAATTAA--TGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCAC 367223 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 367222 GCTCTAACCAACTGAGCTAATGGGCC 367197 >seq31 Length=2414670 Score = 105 bits (116), Expect = 3e-18 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 860613 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 860554 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| Sbjct 860553 CCAGCTGAGCTAATGGGCC 860535 >seq1555 Length=349897 Score = 104 bits (114), Expect = 1e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 49481 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 49422 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 || |||||||||| |||| || Sbjct 49421 CAGCTGAGCTAATAGGCCTTC 49401 >seq276 Length=549069 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| |||||||| ||| | | |||||||| |||||||||||||||||||||||||| Sbjct 331881 AAAAT--AATTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 331938 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 331939 TCTAACCAGCTGAGCTAATAGGCC 331962 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||| ||| | | |||||||| |||||||||||||||||||||||| |||| || Sbjct 271570 AAATTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACTCTCTAAC 271629 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 271630 CAGCTGAGCTAATAGGCC 271647 >seq2854 Length=44124 Score = 86.0 bits (94), Expect = 3e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | || |||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 37781 TGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 37722 Query 11516 TGAGCT 11521 ||| || Sbjct 37721 TGACCT 37716 >seq1437 Length=698196 Score = 82.4 bits (90), Expect = 4e-11 Identities = 73/89 (82%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| |||| ||| |||||||||| | || |||||| ||||||| ||||||||||||| Sbjct 109784 AATGAAAATTCA--TTGGCCCATGCAGGGG--GAACCTGCGACCTTGGCGTTATTAGCAC 109839 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||| | | ||||||| Sbjct 109840 CACGCTCTAACCAACTG-GGTCATGGGCC 109867 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261241784953912