Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1492 174 2e-39 seq237 158 2e-34 seq173 156 7e-34 >seq1492 Length=421702 Score = 174 bits (192), Expect = 2e-39 Identities = 182/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| |||||||| || || |||||||| |||||||||||||| || Sbjct 167922 GATAACATCCAGGGAATTACCAAGCCTGCCATTCGTCGTCTTGCTCGTCGTGGTGGTGTT 167981 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || ||| ||| |||||||||||| ||| | |||| | |||||||| || || Sbjct 167982 AAGAGGATCAGTGGTTTGATCTATGAAGAGACTCGCGGTGTTCTCAAGATCTTTCTAGAG 168041 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || |||||| | ||| || ||||||||| |||||||| || ||| || Sbjct 168042 AATGTGATTAGAGATGCTGTTACCTACACTGAGCACGCTCGCCGTAAGACGGTTACCGCC 168101 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| | || | |||||||||| | |||||||| || |||| Sbjct 168102 ATGGATGTTGTCTATGCGCTTAAGAGGCAAGGCCGTACTCTATATGGTTTCGGTGGTTA 168160 Score = 165 bits (182), Expect = 1e-36 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||| ||||| || || |||||||| ||||| |||||||| |||||||||||||| || Sbjct 178220 GATAATATCCAGGGTATTACCAAGCCTGCTATTCGTCGTCTTGCTCGTCGTGGTGGTGTT 178279 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || ||| ||| |||||||||| | ||| | |||| | |||||||| || || Sbjct 178280 AAGAGGATCAGTGGTTTGATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTAGAG 178339 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || |||||| | ||| || ||||||||| |||||||| || ||| || Sbjct 178340 AATGTGATTAGAGATGCTGTTACCTACACTGAGCACGCTCGCCGTAAGACGGTTACCGCC 178399 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| | || | |||||||||| | |||||||| || |||| Sbjct 178400 ATGGATGTTGTCTATGCGCTCAAGAGGCAAGGCCGTACTCTATATGGTTTCGGTGGTTA 178458 Score = 165 bits (182), Expect = 1e-36 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||| ||||| || || |||||||| ||||| |||||||| |||||||||||||| || Sbjct 194575 GATAATATCCAGGGTATTACCAAGCCTGCTATTCGTCGTCTTGCTCGTCGTGGTGGTGTG 194634 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || ||| ||| |||||||||| | ||| | |||| | |||||||| || || Sbjct 194635 AAGAGGATCAGTGGTTTGATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTAGAG 194694 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || |||||| | ||| || ||||||||| |||||||| || ||| || Sbjct 194695 AATGTGATTAGAGATGCTGTTACCTACACTGAGCACGCTCGCCGTAAGACGGTGACCGCC 194754 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| | || | |||||||||| | |||||||| || |||| Sbjct 194755 ATGGATGTTGTCTATGCGCTCAAGAGGCAAGGCCGTACTCTATATGGTTTCGGTGGTTA 194813 Score = 156 bits (172), Expect = 7e-34 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||| ||||| || || |||||||| ||||| |||||||| |||||||||||||| || Sbjct 188244 GATAATATCCAGGGTATTACCAAGCCTGCTATTCGTCGTCTTGCTCGTCGTGGTGGTGTT 188303 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || ||| ||| |||||||||| | ||| | |||| | |||||||| || || Sbjct 188304 AAGAGGATCAGTGGTTTGATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTAGAG 188363 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || |||||| | ||| || ||||||||| || ||||| || ||| || Sbjct 188364 AATGTGATTAGAGATGCTGTTACCTACACTGAGCACGCTCGCCGGAAGACGGTGACCGCC 188423 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| | || | |||||||||| | |||||||| || |||| Sbjct 188424 ATGGATGTTGTGTATGCGCTCAAGAGGCAAGGCCGTACTCTATATGGTTTCGGTGGTTA 188482 >seq237 Length=451011 Score = 158 bits (174), Expect = 2e-34 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||| || ||||| |||||||| ||||| || ||| |||| ||| | ||||| Sbjct 403719 CGCGACAACATTCAGGGAATTACCAAGCCGGCTATTCGGCGTTTGGCCCGTAGAGGTGGT 403778 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| || ||| | |||| ||||| | ||| | ||| | || ||||| ||| Sbjct 403779 GTGAAGCGTATCAGTGGCCTCATCTACGAAGAAACTCGCGGTGTACTCAAAATCTTTCTC 403838 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || |||| ||||||| || || || ||||||||| || |||||||| ||| Sbjct 403839 GAGAATGTCATCCGTGATGCTGTCACTTACACTGAGCACGCTCGTCGGAAGACTGTTACC 403898 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| | || ||||| |||| | |||||||||| | ||||||||||| || Sbjct 403899 GCCATGGATGTTGTGTATGCTCTGAAGAGGCAAGGCCGTACTCTCTATGGTTTTGGCGGT 403958 Query 16697 TA 16698 || Sbjct 403959 TA 403960 >seq173 Length=569553 Score = 156 bits (172), Expect = 7e-34 Identities = 179/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| |||||||||||||| || || |||||||| ||| | | ||||| || Sbjct 393130 GATAACATCCAGGGAATCACCAAGCCTGCCATTCGTCGTCTTGCTAGAAGAGGTGGTGTG 393071 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || |||| ||||||| |||| ||| | |||||||| | || Sbjct 393070 AAGCGTATCAGCGGTCTGATCTACGAAGAGACCCGTGGTGTCCTCAAGATCTTTTTGGAG 393011 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| || |||||| |||||||| | | |||||||||||| | Sbjct 393010 AACGTCATTCGTGATGCTGTCACCTATACTGAGCACGCCAGGAGGAAGACTGTCACCGCT 392951 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| | || | ||||| | | | || ||||| || ||||| Sbjct 392950 ATGGATGTCGTCTATGCCCTCAAGAGGCAAGGAAGAACTCTCTACGGTTTCGGCGGTTAA 392891 Query 16700 T 16700 | Sbjct 392890 T 392890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79003644505566