Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq52 363 5e-96 seq119 253 6e-63 seq1508 203 9e-48 seq219 203 9e-48 seq1 120 9e-23 seq92 86.0 2e-12 >seq52 Length=1114353 Score = 363 bits (402), Expect = 5e-96 Identities = 502/697 (72%), Gaps = 4/697 (1%) Strand=Plus/Minus Query 19314 GAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCT 19373 || ||||| ||||| | || |||||||| || | ||||| || |||| | |||| Sbjct 279530 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCTACCTTATTGACTGCA 279471 Query 19374 ACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGT 19433 ||| || ||||| | ||||| || || | || || |||||||| ||||| || ||| Sbjct 279470 ACTTCTGTATTTATTATAGCCTTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 279411 Query 19434 GAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCA 19493 || || |||||||| || || | |||||||| |||||||||| || || | |||| Sbjct 279410 GAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTTGGGTGCCATTATTCCT 279351 Query 19494 AGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGATGA 19552 | || | || ||||| ||||||||||||| || |||||||| |||| | | ||||| Sbjct 279350 ACTTCTACAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGC-GGCATCGGTTGATGA 279292 Query 19553 GTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGC 19612 |||||||||||| || ||||| ||| |||| |||| | ||||||||| | || ||||| Sbjct 279291 GTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGC 279232 Query 19613 AGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATT 19672 || ||| | |||||||||| || | | |||| ||| | || ||||| Sbjct 279231 TTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGC 279172 Query 19673 CGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTG 19731 || |||||| | || ||| | ||| ||| |||||| ||||| | | |||||| | | Sbjct 279171 TGTTGCATATTCCGCTCCAGTTGCAGTGGCTACTGCTGT-TTTCTTGATCTACCCAATCG 279113 Query 19732 GGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGT 19791 | ||||| | ||| ||||||||||||||| | |||||||||| ||| ||||||||| Sbjct 279112 GTCAAGGAAACTTTTCTGATGGTATGCCTCTATGAATCTCTGGTAATTTCAACTTTATGA 279053 Query 19792 TCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTG 19851 | ||||||| || || |||| ||||||||||| || || |||||| | ||||| | || Sbjct 279052 TTATATTCCAGGCTGAGAACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGTTG 278993 Query 19852 GCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCA 19911 | ||||||||||| || || || ||||||||| || ||||| ||||| | | Sbjct 278992 GTGTATTCGGTGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGA 278933 Query 19912 TCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAG 19971 | | |||||| || | ||| ||| || | || || | ||||| ||||| |||| Sbjct 278932 TTAGGGAAACCACATAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAG 278873 Query 19972 AGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 | || |||||||| || ||||| || || || ||||| Sbjct 278872 AAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 278836 >seq119 Length=805478 Score = 253 bits (280), Expect = 6e-63 Identities = 445/642 (69%), Gaps = 26/642 (4%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || | || || ||||| ||||| | || ||||||| || | Sbjct 179432 TTCTGTAATTGGATAACCAACACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTCT 179491 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACT---TGCTTTATACTCGCCTTTATCGCAGCA 19406 ||||| ||| |||| | |||| ||| || | | ||||| ||||| || Sbjct 179492 ATGATCCCTACCTTATTGACTGCAACTTCTGTATCCATTATA---GCCTTCAT------- 179541 Query 19407 CCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAAC 19466 ||| ||||| ||||| || ||||| || || ||||| || || | ||| |||| Sbjct 179542 -----TGTTGATATTGATGGTATTCGTGAACCTGTGTCCGGATCTCTACTTTACTGAAAT 179596 Query 19467 AATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCG 19526 ||||||||||| | || | |||| | || || ||||| |||||||||||| Sbjct 179597 AATATTATTTCGGCTGCCATTATTCCTACTTCTGCAGCTATAGGGTGGCACTTTTATCCA 179656 Query 19527 ATCTGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGT 19585 || |||||||| | || | | ||||||||||||||||| || ||||| ||| ||| | Sbjct 179657 ATATGGGAAGC-GACATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACAAAT 179715 Query 19586 TGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTA 19645 ||| | ||||||||| | || ||||| || ||| |||||||||| || Sbjct 179716 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTT 179775 Query 19646 CAGATTAGGAATGAGACCATGGATATTC--GTAGCATATACAGCACCACTATCAGCAGCT 19703 | | ||||| ||| | || | ||||| || |||||| | || ||| | ||| | || Sbjct 179776 CCGTTTAGGTATGCGCCCTT--ATATTGCTGTTGCATATTCCGCTCCAGTTGCAGTACCT 179833 Query 19704 CTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCT 19762 |||||| ||||| | | |||||| | | ||||| | | | ||||||||||||||| Sbjct 179834 ACTGCTGT-TTTCTTGATCTACCCAATCGATCAAGGAACCTATTCTGATGGTATGCCTCT 179892 Query 19763 TGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTAT 19822 || ||||| | |||||| |||||| || | |||||||| || || ||||| |||||||| Sbjct 179893 AGGAATCTCCGATACTTTCAACTTTGTGATTGTATTCCAGGCTGAGCACAACATCCTTAT 179952 Query 19823 GCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTAT 19882 ||| | || |||||| | ||||| |||| |||||||| || || || || |||||| Sbjct 179953 GCACTCATTTCACATGTTAGGTGTACCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTAT 180012 Query 19883 GCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAAC 19924 ||| || | || ||||| | |||| ||||||||| Sbjct 180013 GCATGGTTCCCTTGTAACTTCTAGTTTGATCAGGGAAACAAC 180054 Score = 190 bits (210), Expect = 6e-44 Identities = 233/313 (74%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015 ||||| ||||| | ||| || |||||||| || ||||| || || || ||||| ||||| Sbjct 240439 TTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTG 240498 Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTC 20075 || || ||||||||| |||||| || |||||||||||||| ||||| | ||| ||| Sbjct 240499 ATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGG 240558 Query 20076 CCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAAT 20135 || || || || || ||| |||| | | || || | ||||| | |||||| | ||| Sbjct 240559 CCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTCAAGTTAAAT 240618 Query 20136 GGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGC 20194 ||||| || || ||||| || ||||||||| ||||| || |||| || ||||| Sbjct 240619 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAATACTTGGGC 240677 Query 20195 TGATGTATTAAATAGAGCTAACCTCGGATTTG-AAGTTATGCACGAGCGCAATGCTCATA 20253 |||| | | || | ||||||| ||| || |||||||||| || || |||||||||| Sbjct 240678 TGATATCATTAACCGTCCTAACCT-TGATATGTAAGTTATGCATGAACGTAATGCTCATA 240736 Query 20254 ACTTCCCACTTGA 20266 ||||||| || || Sbjct 240737 ACTTCCCTCTAGA 240749 >seq1508 Length=419047 Score = 203 bits (224), Expect = 9e-48 Identities = 241/324 (74%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 272756 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 272697 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | |||| ||| || ||||| | ||||| || || || || Sbjct 272696 ATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCT 272637 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || |||||||| || || | |||||||| ||| Sbjct 272636 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAAT 272577 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || ||||| ||||||||||||| ||| Sbjct 272576 ATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATC 272517 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||||||||||||||| || ||||| ||| |||| |||| Sbjct 272516 TGGGAAGC-GGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGT 272458 Query 19589 CTTCCACTTCTTAATAGGAGTAGC 19612 | ||||||||| | || ||||| Sbjct 272457 TCTACACTTCTTACTTGGTGTAGC 272434 >seq219 Length=449544 Score = 203 bits (224), Expect = 9e-48 Identities = 241/324 (74%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 176449 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 176390 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | |||| ||| || ||||| | ||||| || || || || Sbjct 176389 ATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCT 176330 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || |||||||| || || | |||||||| ||| Sbjct 176329 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAAT 176270 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || ||||| ||||||||||||| ||| Sbjct 176269 ATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATC 176210 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||||||||||||||| || ||||| ||| |||| |||| Sbjct 176209 TGGGAAGC-GGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGT 176151 Query 19589 CTTCCACTTCTTAATAGGAGTAGC 19612 | ||||||||| | || ||||| Sbjct 176150 TCTACACTTCTTACTTGGTGTAGC 176127 >seq1 Length=3292865 Score = 120 bits (132), Expect = 9e-23 Identities = 150/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 20072 TTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCT 20131 ||| || || || || || ||| |||| | | || || | ||||||||||||||| | Sbjct 1433788 TTTTCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTT 1433729 Query 20132 TAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACAT 20190 |||||||| || || ||||| || ||||||||| ||||| | | |||| || | Sbjct 1433728 AAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTG-TAATTAATACTT 1433670 Query 20191 GGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTC 20250 |||||||| | | || | |||||||| || | ||||||||||| || || ||||||| Sbjct 1433669 GGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 1433610 Query 20251 ATAACTTCCCACTTGATTTAGCT 20273 |||||||||| || || ||||| Sbjct 1433609 ATAACTTCCCTCTAGACCTAGCT 1433587 >seq92 Length=859423 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 19392 GCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 19451 ||||| || || || || || |||||||| ||||| || |||||||| |||||||| || Sbjct 848452 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCCGGATCT 848511 Query 19452 TTAATGTACGGAAACAATATTATTTCTGGAGC 19483 || | |||||||| ||||||||||| || || Sbjct 848512 CTAGTTTACGGAAATAATATTATTTCGGGTGC 848543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144307361574072