Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq52 306 6e-78 seq119 214 3e-50 seq1508 147 4e-30 seq219 147 4e-30 seq1 140 5e-28 seq1502 95.1 2e-14 seq463 93.3 7e-14 seq245 91.5 2e-13 seq47 87.8 3e-12 >seq52 Length=1114353 Score = 306 bits (338), Expect = 6e-78 Identities = 483/688 (70%), Gaps = 3/688 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||| | | ||| | | ||||||| | ||||| Sbjct 279514 TTGGATGGTTTGGTGTTTTGATGATCTC-TACCTTATTGACTGCAACTTCTGTATTTATT 279456 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 |||| ||||| || | ||||| || ||||| || || || |||||||| || | || Sbjct 279455 ATAGCCTTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGA 279396 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || || || || || | ||||| || |||| |||| | || || Sbjct 279395 TCTCTACTTTACGGAAATAATATTATTTTGGGTGCCATTATTCCTACTTCTACAGCTATA 279336 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 || || ||||| ||||| || |||||||| ||| | ||||||||||| | ||||||||| Sbjct 279335 GGGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGT 279276 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | |||||| | | || | | || ||||| | Sbjct 279275 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGT 279216 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| |||||||||| |||||||| |||||| ||||| || Sbjct 279215 GAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCCGCT 279156 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 || || ||| ||| ||||| ||| | | |||||| ||||||| || || || Sbjct 279155 CCAGTTGCAGTGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAACTTTTCT 279096 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| || | || || || | |||||||| ||| | ||||||| || || Sbjct 279095 GATGGTATGCCTCTATGAATCTCTGGTAATTTCAACTTTATGATTATATTCCAGGCTGAG 279036 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 | |||||||||||||||||||| || ||| |||||| | ||| | |||||||| | Sbjct 279035 AACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGTTGGTGTATTCGGTGGCTCC 278976 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 |||| ||||||||| ||||| | || || ||| | || | |||||||| Sbjct 278975 CTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACATAA 278916 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 278915 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 278856 Query 212269 GCTGCACATGGATACTTCGGTAGACTTA 212296 ||||| ||||| || || || ||||||| Sbjct 278855 GCTGCTCATGGTTATTTTGG-AGACTTA 278829 >seq119 Length=805478 Score = 214 bits (236), Expect = 3e-50 Identities = 401/580 (69%), Gaps = 22/580 (4%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| ||||||||||| ||||||||| | ||| | | ||||||| | || |||| Sbjct 179472 TTGGACGGTTTGGTGTTTCTATGATCCC-TACCTTATTGACTGCAAC----TTCTGTATC 179526 Query 211669 GTAGCATTCATCGCAGCACCTCCC-GTTGATATCGACGGAATCCGTGAACCAGTAGCTGG 211727 |||| || || | || |||||||| || || || |||||||| || | || Sbjct 179527 ----CATT-ATAGC----CTTCATTGTTGATATTGATGGTATTCGTGAACCTGTGTCCGG 179577 Query 211728 TTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAAT 211787 || | | || | || || || || || | ||| || |||| |||| || || Sbjct 179578 ATCTCTACTTTACTGAAATAATATTATTTCGGCTGCCATTATTCCTACTTCTGCAGCTAT 179637 Query 211788 CGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGG 211847 || | ||||| ||||| || |||||||| || | ||||||||||| | |||||||| Sbjct 179638 AGGGTGGCACTTTTATCCAATATGGGAAGCGACATCGGTTGATGAGTGGTTATACAATGG 179697 Query 211848 TGGTCCTTAC---CAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGG 211904 ||||||||| || | || ||| | ||||| | | || | | || ||||| Sbjct 179698 TGGTCCTTATGAACAAATTGT--TCTAC-ACTTCTTACTTGGTGTAGCTTGTTATATGGG 179754 Query 211905 AAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTC 211964 ||||||||||| | ||||||||||||||| |||| || |||||| ||||| Sbjct 179755 TCATGAGTGGGAACTTAGTTTCCGTTTAGGTATGCGCCCTTATATTGCTGTTGCATATTC 179814 Query 211965 AGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATT 212024 || || || ||| | || ||||| ||| | | |||||| ||| ||| || | | Sbjct 179815 CGCTCCAGTTGCAGTACCTACTGCTGTTTTCTTGATCTACCCAATCGATCAAGGAACCTA 179874 Query 212025 CTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGC 212084 || || ||||||||| |||| || || | || |||||||| || | |||||||| || Sbjct 179875 TTCTGATGGTATGCCTCTAGGAATCTCCGATACTTTCAACTTTGTGATTGTATTCCAGGC 179934 Query 212085 AGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGG 212144 || || ||||||||||||||| |||| || ||| |||||| | ||| | ||||| || Sbjct 179935 TGAGCACAACATCCTTATGCACTCATTTCACATGTTAGGTGTACCTGGTGTATTCGGCGG 179994 Query 212145 AGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCT 212184 | |||| ||||||||| ||||| ||||| || ||| Sbjct 179995 CTCCCTATTTAGTGCTATGCATGGTTCCCTTGTAACTTCT 180034 Score = 194 bits (214), Expect = 3e-44 Identities = 238/325 (73%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 ||||||| ||||| ||||| | ||| || ||||| ||||| ||||| ||||| || || Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346 ||| || | |||||||| ||||| ||||||||| | ||||||||||||| | Sbjct 240490 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 240549 Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406 || | |||||||| | || | ||||| || || | ||||| | || || | ||| Sbjct 240550 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTC 240609 Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCT 212466 || ||||||| ||||| ||||||||||| || |||||| |||| || || | Sbjct 240610 AAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 240669 Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| |||| | ||||| | | ||||||| |||| |||||||||| ||| | ||| Sbjct 240670 ACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGTAAT 240729 Query 212527 GCACACAACTTCCCACTTGACTTAG 212551 || || |||||||| || ||| ||| Sbjct 240730 GCTCATAACTTCCCTCTAGACCTAG 240754 >seq1508 Length=419047 Score = 147 bits (162), Expect = 4e-30 Identities = 183/248 (74%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | ||||||| | ||||| Sbjct 272716 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACTTCTGTATTTATT 272658 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 |||| ||||| || || ||||| || ||||| || || || |||||||| || | || Sbjct 272657 ATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGA 272598 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || || || || || || ||||| || |||| |||| || || Sbjct 272597 TCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATA 272538 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 || || ||||| ||||| ||||||||||| ||| | ||||||||||| | ||||||||| Sbjct 272537 GGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGT 272478 Query 211849 GGTCCTTA 211856 |||||||| Sbjct 272477 GGTCCTTA 272470 >seq219 Length=449544 Score = 147 bits (162), Expect = 4e-30 Identities = 183/248 (74%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | ||||||| | ||||| Sbjct 176409 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACTTCTGTATTTATT 176351 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 |||| ||||| || || ||||| || ||||| || || || |||||||| || | || Sbjct 176350 ATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGA 176291 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || || || || || || ||||| || |||| |||| || || Sbjct 176290 TCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATA 176231 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 || || ||||| ||||| ||||||||||| ||| | ||||||||||| | ||||||||| Sbjct 176230 GGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGT 176171 Query 211849 GGTCCTTA 211856 |||||||| Sbjct 176170 GGTCCTTA 176163 >seq1 Length=3292865 Score = 140 bits (154), Expect = 5e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 212371 TGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAAC 212430 ||||| || || | ||||| | || ||||| |||||| ||||||| ||||| |||||| Sbjct 1433769 TGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTAAATGGTTTCAATTTCAAC 1433710 Query 212431 CAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGA 212490 ||||| || |||||| |||| || || |||||||| |||| | ||||| | Sbjct 1433709 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGT 1433650 Query 212491 GCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTA 212550 || ||||||||||||||||||||||| ||| | ||||| || |||||||| || ||| || Sbjct 1433649 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 1433590 Query 212551 GC 212552 || Sbjct 1433589 GC 1433588 >seq1502 Length=441271 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/209 (72%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 193956 TTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGT 194015 ||||| || ||||| |||||||| || ||||| ||| | |||| ||||| || | | | Sbjct 16837 TTCAACCATGAATCACCAAGAAGGGGAGAGACCTTTTTGACTCAGAAGATCACTCGTGTT 16778 Query 194016 -TTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATGCTAA 194074 ||| | | |||| | || |||| | |||| |||||||||| || | || Sbjct 16777 GTTAGC-AGGATCAAGATCGGGCCTCAGATCAAGCTTT-TCTTGGTAATTTTCAAGCATC 16720 Query 194075 GAGGGATTGGGGA--CACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAG 194132 |||||||||| | |||| | || ||||||||||| |||||||| ||| | |||||| Sbjct 16719 AAGGGATTGGGTATTCACGGGA--GACTATGTTGAAGCAATGTGGTTGATGCTTCAACAG 16662 Query 194133 GATGAACCCGATGATTATGTGATTGCTAC 194161 || | || ||||| |||||| |||| || Sbjct 16661 GAAAATCCTGATGACTATGTGGTTGCCAC 16633 >seq463 Length=209546 Score = 93.3 bits (102), Expect = 7e-14 Identities = 153/215 (71%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 193950 ATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACA 194009 ||| | ||||| || ||||| |||||||| || ||||| ||| | |||| ||||| || Sbjct 135377 ATTTTTTTCAACCATGAATCACCAAGAAGGGGAGAGACCTTTTTGACTCAGAAGATCACT 135318 Query 194010 CAAGGT-TTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAA 194068 | | | ||| | | |||| | || |||| | |||| |||||||||| | | Sbjct 135317 CGTGTTGTTAGC-AGGATCAAGATCGGGCCTCAGATCAAGCTTT-TCTTGGTAATTTGCA 135260 Query 194069 TGCTAAGAGGGATTGGGGA--CACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTG 194126 || |||||||||| | |||| | || ||||||||||| |||||||| ||| | Sbjct 135259 AGCATCAAGGGATTGGGTATTCACGGGA--GACTATGTTGAAGCAATGTGGTTGATGCTT 135202 Query 194127 CAACAGGATGAACCCGATGATTATGTGATTGCTAC 194161 |||||||| | || ||||| |||||| |||| || Sbjct 135201 CAACAGGAAAATCCTGATGACTATGTGGTTGCCAC 135167 >seq245 Length=395765 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 193956 TTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGT 194015 ||||| |||||||| |||||||| || |||| ||||| || |||||||| || | | | Sbjct 152226 TTCAACCACGAATCACCAAGAAGGGGAGAGAATTTTGTGACCCGTAAGATCACCCGTGCT 152167 Query 194016 TTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGG-TAATCTTAATGCTAA 194074 | | |||| | || | |||| | |||| |||||| |||| | | || Sbjct 152166 GTTGGCAGGATCAAGATCGGGCTTCAGAGCAAGCTTT-TCTTGGGTAATTTGCAAGCATC 152108 Query 194075 GAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGA 194134 |||||||||||| ||| || ||||| ||||| |||||||| ||| | |||||||| Sbjct 152107 AAGGGATTGGGGATTCGCTGGAGACTATGTAGAAGCAATGTGGTTGATGCTTCAACAGGA 152048 Query 194135 TGAACCCGATGATTATGTGATTGCTAC 194161 | || ||||| || ||| |||| || Sbjct 152047 AAAGCCTGATGACTACGTGGTTGCCAC 152021 >seq47 Length=1108644 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/215 (71%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 193950 ATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACA 194009 ||| | ||||| || ||||| |||||||| || ||||| ||| | |||| ||||| || Sbjct 337003 ATTTTTTTCAACCATGAATCACCAAGAAGGGGAGAGACCTTTTTGACTCAGAAGATCACT 337062 Query 194010 CAAGGT-TTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAA 194068 | | | ||| | | |||| | || |||| | |||| |||||||||| | | Sbjct 337063 CGTGTTGTTAGC-AGGATCAAGATCGGGCCTCAGATCAAGCTTT-TCTTGGTAATTTGCA 337120 Query 194069 TGCTAAGAGGGATTGGGGA--CACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTG 194126 || ||||||||| | |||| | || ||||||||||| |||||||| ||| | Sbjct 337121 AGCATCAAGGGATTGGTTATTCACGGGA--GACTATGTTGAAGCAATGTGGTTGATGCTT 337178 Query 194127 CAACAGGATGAACCCGATGATTATGTGATTGCTAC 194161 |||||||| | || ||||| |||||| |||| || Sbjct 337179 CAACAGGAAAATCCTGATGACTATGTGGTTGCCAC 337213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806765188936720