Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq40 102 9e-17 >seq40 Length=1826671 Score = 102 bits (112), Expect = 9e-17 Identities = 294/444 (66%), Gaps = 14/444 (3%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | |||||| || || || || || ||||| |||| | || || | Sbjct 1767080 TTTCTGATATTCCCCAACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTGAAGAGAAATCAA 1767021 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| |||||||||| ||| | | | ||| ||| || ||| | | ||| Sbjct 1767020 CTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACACCCAAGTGCAGCTAA 1766961 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 |||||||| || ||||| || || || |||| ||| | ||||| ||||| || | || Sbjct 1766960 CAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAGTTCATCCCTACCAG 1766901 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 ||||| || || | | |||| || ||| || | || ||||| | | ||| Sbjct 1766900 CTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACCGCTTCTTCCACTAT 1766841 Query 21424 A---TTTATTATC-CTAGATGTA-CTAGGGGGATACAATAAT-TGTTTAAACATCAAACA 21477 | | | || | | | || || | ||| || ||| ||| ||| || Sbjct 1766840 TGCCTGAACTTTCTCCACACTTAGCTTTTTC--TTCAACAAGCTGT----ACAGCAAGCA 1766787 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||||||||| || | |||||||| | ||| || || || || || ||||| || Sbjct 1766786 GGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAATCC 1766727 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAAAA 21596 ||||||||| || | |||||| | ||| ||||| || ||| | || ||| || ||||||| Sbjct 1766726 GGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGA-GCAGAAGCTTCCAGAGAAGAAAA 1766668 Query 21597 TGCCCTCAACGGCAGCAAATGCAA 21620 | || ||||| ||| || |||| Sbjct 1766667 TCCCTTCAACACAAGCGAAAGCAA 1766644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531380454744880