Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq40 109 1e-18 >seq40 Length=1826671 Score = 109 bits (120), Expect = 1e-18 Identities = 343/530 (65%), Gaps = 5/530 (1%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGT 22494 ||||| || ||||||||||| || |||||| || | | || ||||| ||| | Sbjct 1766580 AAGAAGAAAGCAGATTGGGCCCTCCGATGGATCGACGGAGCAGAATCCTTCGCCGAAAGA 1766639 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 |||||||| || ||| |||||||| |||||||| |||||| || || | || || Sbjct 1766640 CTTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGCTTCTGCTCCATATTC 1766699 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| ||||| || | | ||||| || |||| || ||||| ||||| || || Sbjct 1766700 TGGCTGAAAAAGCGCGGGTTAATGCCCGGATTAACCTTCTCAAACGAGTTGATATCGCGT 1766759 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAA 22674 ||||| || ||||| |||||||| || |||| || | | | | | ||| Sbjct 1766760 GATGAAGGGCTTCACTGTGATTTTGCCTGCTTGCTGTA----CAGCTTGTTGAAGAAAAA 1766815 Query 22675 CTTCCATAT-GAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATT 22733 | | | || | || | | || | | | || || | | ||||| ||| Sbjct 1766816 GCTAAGTGTGGAGAAAGTTCAGGCAATAGTGGAAGAAGCGGTGGCGATCGAACGCGAATT 1766875 Query 22734 TATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATA 22793 | || || | || |||| || | || || || || |||||| || Sbjct 1766876 CGTGACGGATTCGCTGCCGGTAAAGCTGGTAGGGATGAACTGTGAGCTTATGAGTCAGTA 1766935 Query 22794 TATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGT 22853 ||| | |||||||| ||| | | ||| | |||| || | || ||| || || Sbjct 1766936 CATTGAGTTTGTTGCTGATAGATTGTTAGCTGCACTTGGGTGTGGTAAGGTGTACGGTGT 1766995 Query 22854 CGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGA 22913 || || |||||||| |||||||| | ||||| ||| |||| ||||| || ||||| || Sbjct 1766996 GGTAAACCCATTTGATTGGATGGAGTTGATTTCTCTTCAAGGGAAGACTAACTTCTTTGA 1767055 Query 22914 AAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCATTGAATG 22963 || |||||||| ||||| || ||||| ||||||| | ||||||| Sbjct 1767056 GAAGAGAGTTGGGGAATATCAGAAAGCTTCTGTTATGTCTAGCTTGAATG 1767105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302046685800884