Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1435 134 1e-26 seq20 131 2e-25 seq909 122 8e-23 seq1663 114 1e-20 seq865 107 2e-18 seq810 104 2e-17 seq37 104 2e-17 seq1099 98.7 9e-16 >seq1435 Length=543809 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | |||||| ||||| ||||||||||||||| Sbjct 91953 CCACCACGAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCGGCG 91894 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||||| ||||| || ||| |||| | || ||||||||||| ||| Sbjct 91893 AGTGTTCTTCCATCCTCTAATTGCTTCCCGGCGAAGATCAGGCGTTGCTGGTCCGGTGGG 91834 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| |||||||| ||| || |||| | || | ||||||| ||| || | Sbjct 91833 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCGATTGTATCGGAGGATTCCACT 91774 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || ||||| ||||| |||||||| ||||| Sbjct 91773 TCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATTTGCAT 91727 >seq20 Length=1286389 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| ||||| | || | || || ||||| || |||||||| ||| Sbjct 250563 CCACCCCTAAGACGAAGCACCAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCT 250504 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 250503 AGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGG 250444 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||||| | || | ||||||| ||| || | Sbjct 250443 ATGCCTTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATGGTATCGGAGGATTCAACC 250384 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || ||||| ||||| |||||||||||||| Sbjct 250383 TCTAGGGTTATGGTTTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 250337 >seq909 Length=350832 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || |||||||| |||||||||||| | ||| || ||| || ||||| || || Sbjct 176306 GTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGTTTTCCG 176365 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | ||| |||||||| || ||||| ||||| ||||| ||| || ||| Sbjct 176366 GCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTG 176425 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||||||| ||| || | || | ||| | |||||| || ||||| ||| Sbjct 176426 ACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTTAGGGTT 176485 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 176486 TTCACGAAAATCTGCAT 176502 >seq1663 Length=237253 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131004 TGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 || |||||| || | || || || | || | ||| |||||||| || |||||||| || Sbjct 10441 TGCGCCACCACGAAGGCGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 10382 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 | | ||||| ||| || ||||| || || ||| |||| | |||||||||||| || Sbjct 10381 GGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCGGCGAAGATAAGACGCTGCTGGTCTGG 10322 Query 131124 AGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTC 131183 ||||| ||||| ||||| ||| || || | | || | || || | ||| || Sbjct 10321 GGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTC 10262 Query 131184 GATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | ||| | |||||| |||||||| ||||| ||||| |||||||| Sbjct 10261 TACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 10211 >seq865 Length=406355 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| ||||| | ||| | ||| || ||||| || |||||||| || | Sbjct 6331 CCTCCCCTCAAACGGAGCACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCC 6390 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || || |||| || | ||||||||| || ||| Sbjct 6391 AAAGTACGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 6450 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || |||||| ||| | | || | ||| |||| | ||| | Sbjct 6451 ATTCCTTCCTTATCTTGGATTTTGGCCTTTACGTTGTCAATAGTGTCGGAGCTCTCCACC 6510 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || ||||| || || ||||||||||| Sbjct 6511 TCCAAGGTGATGGTCTTTCCTGTAAGAGTCTTAACAAAAATCTGCAT 6557 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| ||||| ||||| | ||| ||||||||||| || |||||||| | | Sbjct 5875 CCTCCCCTCAAACGAAGCACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAATC-CGC 5933 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | | || || |||||||| ||||| |||| | | ||||||||| || || Sbjct 5934 AAGAGTCCTCCCATCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 5993 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||| | || | || || | ||| | Sbjct 5994 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAAC 6053 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || | || || |||||||||||||| Sbjct 6054 CTCCAAGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 6101 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| |||||||||||||| | Sbjct 5647 CCACCACGAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 5706 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || || || || || |||| || | ||||||||| || ||| Sbjct 5707 AAGGTGCGACCATCCTCAAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 5766 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | || || | | ||| | Sbjct 5767 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCAATCGTGTCCGAGCTCTCAACC 5826 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| ||||| || | || || || ||||||||||| Sbjct 5827 TCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAAATCTGCAT 5873 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| |||||||| || |||||||| || | Sbjct 6103 CCACCACGAAGACGGAGAACCAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 6162 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||||||||| | || || | ||||||||| || ||| Sbjct 6163 AAAGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGG 6222 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | || || | ||| | Sbjct 6223 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACC 6282 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || | ||||| |||||||||||||| Sbjct 6283 TCCAAGGTAATAGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 6329 >seq810 Length=562993 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| |||||||||||||| | Sbjct 114850 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 114909 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| ||| ||||| || ||||| || || |||| || | ||||||||| || ||| Sbjct 114910 AAGGTACGCCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 114969 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||||| | | ||| | Sbjct 114970 ATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATCGTATCAGAGCTCTCCACC 115029 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | || || || ||||||||||| Sbjct 115030 TCTAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAAATCTGCAT 115076 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| ||||| | || | ||| |||||||| || |||||||| || | Sbjct 115306 CCTCCCCTCAAACGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 115365 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || ||||| || ||| | || || | ||||||||| || || Sbjct 115366 AAAGTACGGCCATCCTCAAGTTGCTTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGA 115425 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| ||| ||| |||| | || | || |||| | ||| | Sbjct 115426 ATACCCTCCTTATCC-TGAATTTTTGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCAC 115484 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || || ||||||||||| Sbjct 115485 CTCTAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAAATCTGCAT 115532 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||||||| | || || ||||| ||||| || || Sbjct 115792 GTTGACTCCTTCTGGATGTTGTAATCGGCAAGAGTTCGGCCATCCTCGAGCTGTTTTCCG 115851 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | | |||||||| || || || || || || || |||||| |||| Sbjct 115852 GCGAAGATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATTTTAGCCTTG 115911 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| |||| |||| ||| | |||||| || || || ||| Sbjct 115912 ACGTTGTCAATGGTGTCGGAACTTTCGACTTCGAGGGTGATGGTTTTTCCAGTGAGGGTT 115971 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 115972 TTCACGAAGATCTGCAT 115988 >seq37 Length=1785839 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | || || ||||| || |||||||| ||| Sbjct 885928 CCACCACGAAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCA 885869 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || || | ||| || || ||| |||| | || || |||||||| ||| Sbjct 885868 AGTGTTCTTCCATCTTCCAACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGG 885809 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || |||| | || | || |||| ||| || | Sbjct 885808 ATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGGATTCTACT 885749 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| |||||||| ||||| ||||| |||||||| Sbjct 885748 TCTAGGGTTATGGTTTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 885702 >seq1099 Length=206994 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| ||||| | ||| | ||| |||||||| || ||||||||||| Sbjct 75127 CCACCCCTTAGACGGAGCACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCG 75068 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || ||||| || || |||| | ||| |||||||| ||||| Sbjct 75067 AGGGTACGTCCATCCTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGAGGA 75008 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| ||||| || ||| || ||| | | || | ||| |||| ||| | Sbjct 75007 ATTCCCTCTTTATCTTGGATCTTGGTCTTAACATTGTCAATAGTGTCGGAACTCTCAACC 74948 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| ||||| ||||| || ||||| || ||||| Sbjct 74947 TCCAGAGTTATAGTTTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 74901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| || | ||| || || | || | ||| ||||||||||| ||||||||||| | Sbjct 75585 AGCCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAATC-C 75527 Query 131066 TCATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGA 131124 || | || | | ||||| | ||||| || || ||||||| | |||||| || || Sbjct 75526 GCAAGAGTCCTCCCATCCTCCAATTGCTTTCCAGCAAAGATTAACCTCTGCTGATCTGGG 75467 Query 131125 GGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCG 131184 || ||||| || || || ||||| ||||| | || | || || | | ||| Sbjct 75466 GGAATTCCCTCCTTATCCTGAATTTTAGCCTTGACATTGTCAATGGTGTCTGAGCTCTCA 75407 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | |||| || || || || | || || |||||||||||||| Sbjct 75406 ACCTCCAGAGTAATAGTCTTCCCAGTCAAGGTCTTGACGAAAATCTGCAT 75357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471551041678080