Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq37 116 3e-21 seq810 104 2e-17 seq1435 87.8 1e-12 seq865 86.0 5e-12 seq1663 82.4 6e-11 >seq37 Length=1785839 Score = 116 bits (128), Expect = 3e-21 Identities = 168/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| || || || || ||||| || |||||||||||||| Sbjct 885929 CCCACCACGAAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGC 885870 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | || ||||| ||||| || || | || || || ||||||||| || Sbjct 885869 AAGTGTTCTTCCATCTTCCAACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGG 885810 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| |||||||| || || ||| || || | | | | |||||| || || Sbjct 885809 GATGCCTTCTTTGTCTTGGATCTTGGCT--TTGACGTTGTCGATTGTGTCGGAGGATTCT 885752 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 ||| | ||| |||||||||||||| || |||||||| || ||||||||||||| Sbjct 885751 ACTTCTAGGGTTATGGTTTTTCCGGTTAGGGTTTTGACGAAGATCTGCATTTTGT 885697 >seq810 Length=562993 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||| |||| || | | ||| Sbjct 115321 AGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCC 115380 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| || ||||| |||| | || ||| ||||| || | ||||| || || Sbjct 115381 TCAAGTTGCTTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCC 115440 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | | |||||| | |||| || | ||||||||| Sbjct 115441 TGAATTTTTGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCTAAGGTGATGGTC 115500 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || || ||||||||||||||||| Sbjct 115501 TTTCCGGTGAGGGTCTTGACAAAAATCTGCAT 115532 >seq1435 Length=543809 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| || || || || ||||| || |||||||| ||||| Sbjct 91954 CCCACCACGAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCGGC 91895 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | ||||| ||||| || || || | || || || || |||||| || Sbjct 91894 GAGTGTTCTTCCATCCTCTAATTGCTTCCCGGCGAAGATCAGGCGTTGCTGGTCCGGTGG 91835 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||||||||| || || ||| || || | | | | || ||| || ||| Sbjct 91834 GATTCCCTCTTTGTCTTGGATCTTGGCT--TTGACGTTGTCGATTGTATCGGAGGATTCC 91777 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||| | ||| |||||||| || || || ||||| || ||||| |||||| || Sbjct 91776 ACTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATTTGCATTGTG 91723 >seq865 Length=406355 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||| ||||| || ||||||||||| |||| || | | || Sbjct 6346 AGCACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCT 6405 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || ||| | || | || ||| ||||| || | || || || || Sbjct 6406 TCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCT 6465 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | | ||||||| | |||| |||| ||||||||| Sbjct 6466 TGGATTTTGGCCTTTACGTTGTCAATAGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTC 6525 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || || |||||||||||||| Sbjct 6526 TTTCCTGTAAGAGTCTTAACAAAAATCTGCAT 6557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||| || |||| ||| | ||||| | |||| Sbjct 5671 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATCCTCAAGTTGT 5730 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || | || ||| ||||| || | ||||| ||||| || | | Sbjct 5731 TTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTC 5790 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | ||| |||| ||||||||| || || ||| Sbjct 5791 GCCTTCACATTATCAATCGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTACCAGTC 5850 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 | || || ||||||||||||||| Sbjct 5851 AAGGTCTTCACAAAAATCTGCATT 5874 >seq1663 Length=237253 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||| | || |||| || | ||| Sbjct 10413 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGT 10354 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | ||||| ||||| ||||| || | ||| || ||||| || || Sbjct 10353 TTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTG 10294 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | | ||||| || || || | ||| |||||||| |||| Sbjct 10293 GCT--TTCACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGG 10236 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || || ||||||||||| Sbjct 10235 TTAGGGTTTTCACGAAGATCTGCATTTT 10208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404701619723380