Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq329 123 2e-23 seq1435 109 5e-19 seq37 105 6e-18 seq1099 104 2e-17 seq810 100 2e-16 seq865 91.5 1e-13 >seq329 Length=298387 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || ||| | ||||| | ||||| ||| ||| Sbjct 179857 ATGCAAATCTTTGTGAAGACACTTACAGGGAAAACAATCACTCTAGAAGTAGAGAGTTCT 179916 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| || ||| ||||||||||||||||| || || | Sbjct 179917 GATACAATTGA--CAATGTTAAGACCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATC 179974 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || | || ||||| || |||||| | || |||| | || | | ||||||| Sbjct 179975 AACAGAGGCTAATCTTTGCTGGTAAACAACTCGAGGATGGAAGAACCCTTGCAGATTACA 180034 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | |||||||| ||||| || || |||||||| || | ||||| || || Sbjct 180035 ACATTCAAAAGGAATCAACTCTCCATTTAGTTCTTCGTCTAAGGGGTGG 180083 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || ||||| |||| || | || || || | ||| Sbjct 180085 ATGCAGATCTTTGTTAAGACCCTTACTGGTAAGACCATTACTCTTGAGGTTGAAACTTCT 180144 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| | || | |||| || |||||||| ||| ||||||| || Sbjct 180145 GACACGATTGAAAATGTTAAGACCAAGATTCAC-GATAAAGAAGGTATTGCACCTGATCA 180203 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||| || ||||| ||||| |||| | | ||| | | || || || Sbjct 180204 ACAAAGACTCATCTTTGCTGGGAAACAGTTAGAGGATGGTAGAACTCTTGCAGACTATAA 180263 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| || || || || ||||| || || Sbjct 180264 TATTCAAAAGGAGTCTACTCTGCATTTGGTACT 180296 >seq1435 Length=543809 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || || || | || || ||| |||| || | |||||||| || Sbjct 91724 ACAATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGAATCC 91783 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || || || ||||| |||| |||| || ||| |||||||| || || ||||| Sbjct 91784 TCCGATACAATCGACAACGTCA---AAGC-CAAGATCCAAGACAAAGAGGGAATCCCACC 91839 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||| || || | || || ||||| || |||||||| |||| | || | | ||| Sbjct 91840 GGACCAGCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGA 91899 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| || ||||| || || || || ||||| Sbjct 91900 TTACAACATTCAGAAGGAATCGACCCTTCACTTGGTGCT 91938 >seq37 Length=1785839 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || | ||||| ||| |||| || | ||||| || || || Sbjct 885701 AATGCAGATCTTCGTCAAAACCCTAACCGGAAAAACCATAACCCTAGAAGTAGAATCCTC 885760 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| ||||| |||| |||| || | || ||||||||||| || ||||| | Sbjct 885761 CGACACAATCGACAACGTCA---AAGCCAAGATCCAA-GACAAAGAAGGCATCCCACCGG 885816 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| || | || || ||||| ||||| || ||||||| | || | | ||| | Sbjct 885817 ACCAACAACGCCTCATCTTCGCCGGAAAACAGTTGGAAGATGGAAGAACACTTGCCGACT 885876 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || || ||||| || || || || ||||| Sbjct 885877 ACAACATCCAGAAGGAATCTACTCTCCACTTGGTGCT 885913 >seq1099 Length=206994 Score = 104 bits (114), Expect = 2e-17 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||||||||| || || | || || | || || ||| || Sbjct 75129 ATGCAGATATTTGTCAAGACTTTGACTGGGAAGACTATTACTCTGGAGGTTGAGAGCTCA 75188 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || || | ||| ||||| || |||||||| || || Sbjct 75189 GACACAATTGA--CAATGTTAAGGCTAAGATTCA-GGACAAGGAGGGGATTCCCCCAGAT 75245 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || || | ||||||| |||||| | | |||||| Sbjct 75246 CAGCAGAGGTTGATATTTGCTGGAAAGCAGCTTGAAGATGGCCGCACTCTTGCAGATTAC 75305 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || || ||| | ||||| | ||||| || |||| Sbjct 75306 AACATCCAGAAGGAGTCAACCCTTCATCTTGTGCTTCGACTAAGGGGTGGAA 75357 >seq810 Length=562993 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || || ||| || Sbjct 115304 ATGCAGATTTTCGTCAAGACCTTGACGGGAAAGACCATCACGTTGGAGGTTGAGAGCTCA 115245 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || | || || | ||| ||||| || || ||||| || ||| Sbjct 115244 GACACCATCGA--CAATGTTAAGGCGAAGATTCAA-GACAAGGAGGGCATTCCCCCAGAC 115188 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | ||||| |||||||| || | || |||| | ||| | | |||||| Sbjct 115187 CAGCAGAGGTTGATTTTCGCCGGCAAGCAGCTGGAGGATGGGAGGACTCTTGCGGATTAC 115128 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || ||||| || || || || || || || | | || ||||||| Sbjct 115127 AATATCCAGAAAGAGTCTACCCTTCACTTGGTTCTTCGTTTGAGGGGAGGAA 115076 >seq865 Length=406355 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || | || || | || || ||| || Sbjct 6101 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACTATTACCTTGGAGGTTGAGAGTTCA 6042 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| ||||| ||||| || || || |||| Sbjct 6041 GACACCATTGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGACC 5984 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||| || || || | ||||||| | ||| | | ||||||| Sbjct 5983 AGCAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGATGGGAGGACTCTTGCGGATTACA 5924 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||| ||||| || || || || ||||| ||||| | | || ||||||| Sbjct 5923 ATATCCAAAAGGAGTCTACCCTTCATTTGGTGCTTCGTTTGAGGGGAGGAA 5873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432914683899530