Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq66 217 2e-51
seq40 208 8e-49
seq126 104 3e-17
seq14 100 3e-16
seq51 91.5 2e-13
seq22 91.5 2e-13
seq3795 86.0 7e-12
seq693 84.2 2e-11
seq831 82.4 8e-11
seq499 82.4 8e-11
seq34 82.4 8e-11
seq10 82.4 8e-11
seq6 82.4 8e-11
seq3 82.4 8e-11
>seq66
Length=1001823
Score = 217 bits (240), Expect = 2e-51
Identities = 606/910 (67%), Gaps = 40/910 (4%)
Strand=Plus/Minus
Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861
||| || |||||||||||| | ||||||||||| || ||||| |||| | ||| ||| |
Sbjct 953394 TTTCTGATATTCCCCAACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTGAAGAGAGATCAA 953335
Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTA--C 92917
| || | | | ||| || | || ||| ||| | | | || | |
Sbjct 953334 CTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCAC--ACCCAAGCGCAGCC 953277
Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
|| | ||||| || ||||| || || |||||| ||||| ||||| ||||| ||||
Sbjct 953276 AAAAGCCTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACC 953217
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
|| |||||| || | || |||| ||| || ||||||| | || ||||||| | |
Sbjct 953216 AGCTTTACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACG 953157
Query 93038 ATTT-CTA---TTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCA 93093
||| || || ||| || | || || || || | | ||| | |||||| |||||
Sbjct 953156 ATTGACTGGACTTTCTCCAC-ACTTAGT--TTCTTCTTCAACA-AGCTGTACAGCAAGCA 953101
Query 93094 CGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153
|| ||||| || | ||||||||||| ||||||| ||| || ||| ||||| ||
Sbjct 953100 GGCGAAGTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAATCC 953041
Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTA 93212
|| | | || || || |||||||| |||| || |||| ||||| || || || || |
Sbjct 953040 GGGCATTAACCCGCGCTTTTTGAGCCAGAATA-TGGAGCAGAAACTTCCGGAGAAGAAGA 952982
Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATT-TGCGGAATTACTGC 93269
| ||||| ||| || || || | | | |||||||| ||| |||| | |
Sbjct 952981 TCCCTTCAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCG------CCGT 952928
Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329
|||||| | ||||| || ||||| ||||| | || || | || ||||| ||
Sbjct 952927 CAATCCATCGGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATTGCTC 952868
Query 93330 TAAATAGGT---AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386
|| |||| | | || || || ||| ||||| || || | | ||||| |
Sbjct 952867 GGAAGAGGTGGGATTTAAGC---TCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAGT 952811
Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446
||||||| || |||| || || ||||| |||||||| |||||||| | || || |
Sbjct 952810 ACATTTCGGAGTGGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCTCAG 952751
Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506
| ||| || |||| ||||| | |||||||||| |||||| || ||||| |
Sbjct 952750 CAACCTGGACCTCTTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGGAGG 952691
Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTAT 93563
| || || || || | ||||| | ||||| |||| ||| || | | ||| | |
Sbjct 952690 CGGCGAAGAAGGCGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGGTTT 952631
Query 93564 CCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621
|||||| ||| | |||| ||| || || |||||||| | ||||| || || |||||
Sbjct 952630 CCCAATGACGGTT--GTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTTC 952573
Query 93622 TGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGAT 93680
|| || |||||||| ||||| || | | | |||| ||||| || || ||| || | ||
Sbjct 952572 AGCCTTCTTGTACATCTCCCAGATTTGTGGGTATTTGATTGGGAACAT-ACAGAATCTAT 952514
Query 93681 TAGGGTTATC 93690
||||| ||
Sbjct 952513 CTGGGTTTTC 952504
>seq40
Length=1826671
Score = 208 bits (230), Expect = 8e-49
Identities = 526/788 (67%), Gaps = 30/788 (4%)
Strand=Plus/Minus
Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
|| ||||||||||| ||||| || ||||||||| ||| | ||||| ||||| ||||
Sbjct 1766962 AACAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAGTTCATCCCTACC 1766903
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
|| ||| || || | || |||| ||| || ||||| | || ||||||| ||
Sbjct 1766902 AGCTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACCGCTTCTTCCACT 1766843
Query 93038 ATTTCTA----TTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCA 93093
||| | || ||| || || | | |||| | | ||| | |||||| |||||
Sbjct 1766842 ATTGCCTGAACTTTCTCCACACTTAGCT---TTTTCTTCAACA-AGCTGTACAGCAAGCA 1766787
Query 93094 CGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153
||||| || || | ||||| || || ||||||||||| || ||| ||||| ||
Sbjct 1766786 GGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAATCC 1766727
Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTA 93212
|| | | || || || || ||||| ||||| || ||| || || ||||| || || |
Sbjct 1766726 GGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGA-GCAGAAGCTTCCAGAGAAGAAAA 1766668
Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT-- 93270
| ||||| || || || || | || | |||||| || | ||| |||||
Sbjct 1766667 TCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAA-------GGATT-CTGCTCC 1766616
Query 93271 ---GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327
||||||| | |||||||| ||||| ||||| | ||| || | || ||||| ||
Sbjct 1766615 GTCGATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGATTGC 1766556
Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387
| || |||| | ||| || ||| ||||| || || | | || |||||
Sbjct 1766555 GCGGAAGAGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGGAATA 1766496
Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447
|||||| || |||| || || || || |||||||| |||||||| | || || |
Sbjct 1766495 CATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCCTCTGC 1766436
Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507
| ||| || |||| ||||| | |||||||||| ||| || || || || ||
Sbjct 1766435 TACCTGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCAGAGGC 1766376
Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATC 93564
|| || || || | || || | || || |||| ||| || | | || || ||
Sbjct 1766375 GGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATGTTTTC 1766316
Query 93565 CCAATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623
||| | | | | | || | ||| |||||||||||||| | ||||| || || ||||| |
Sbjct 1766315 CCAGTGGCGGTTG-TCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCTTCAG 1766257
Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTA 93682
|||| |||||||| ||||| || | | |||||| ||||| || || ||| || | ||
Sbjct 1766256 CTTTCTTGTACATTTCCCAGATTTGTGGATATTTGATTGGGAACAT-ACAGAATCTATCT 1766198
Query 93683 GGGTTATC 93690
||||| ||
Sbjct 1766197 GGGTTTTC 1766190
>seq126
Length=799273
Score = 104 bits (114), Expect = 3e-17
Identities = 88/105 (84%), Gaps = 5/105 (5%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| || | || | ||
Sbjct 485164 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTCACGAGGGC 485105
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA-TTATTGGAATTTTT 126366
||||||||||||||||| |||||||| | ||||| |||||||
Sbjct 485104 GTGGGTTCGAACCCCACTTCTGACAAAAAATTTATT--AATTTTT 485062
>seq14
Length=1475405
Score = 100 bits (110), Expect = 3e-16
Identities = 75/87 (86%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 741107 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 741166
Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349
||||||||||||||||| ||||||||
Sbjct 741167 GTGGGTTCGAACCCCACTTCTGACAAA 741193
>seq51
Length=1127560
Score = 91.5 bits (100), Expect = 2e-13
Identities = 73/87 (84%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 525767 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 525826
Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349
|||||||| || ||||| ||||||||
Sbjct 525827 GTGGGTTCAAATCCCACTTCTGACAAA 525853
>seq22
Length=1254882
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/92 (83%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 177066 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 177125
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||||| || ||||| |||||||||||||
Sbjct 177126 GTGGGTTCAAATCCCACTTCTGACAAATTATT 177157
>seq3795
Length=17394
Score = 86.0 bits (94), Expect = 7e-12
Identities = 71/86 (83%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | |||
Sbjct 5914 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGCAAGAGGGCG 5973
Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349
||||||| || ||||| ||||||||
Sbjct 5974 TGGGTTCAAATCCCACTTCTGACAAA 5999
>seq693
Length=120835
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/88 (82%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | |||
Sbjct 2074 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 2015
Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351
||||||| || ||||| ||||||||||
Sbjct 2014 TGGGTTCAAATCCCACTTCTGACAAATT 1987
>seq831
Length=481116
Score = 82.4 bits (90), Expect = 8e-11
Identities = 73/89 (82%), Gaps = 3/89 (3%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | |||
Sbjct 28134 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGCAAGAGGGCG 28075
Query 126324 TGGGTTCGAACCCCACACCTGACA-AATT 126351
||||||| || ||||| |||||| ||||
Sbjct 28074 TGGGTTCAAATCCCACTTCTGACATAATT 28046
>seq499
Length=186503
Score = 82.4 bits (90), Expect = 8e-11
Identities = 75/94 (80%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAG 126321
|||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | |
Sbjct 22511 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGG 22452
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355
||||||||| || ||||| |||||| || |||
Sbjct 22451 CGTGGGTTCAAATCCCACTTCTGACATTTTTTTA 22418
>seq34
Length=1960455
Score = 82.4 bits (90), Expect = 8e-11
Identities = 83/106 (78%), Gaps = 4/106 (4%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | |||
Sbjct 20282 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 20341
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
||||||| || ||||| ||||| || ||| || ||||||| ||
Sbjct 20342 TGGGTTCAAATCCCACTTCTGAC--ATAATTTTTCCAATTTTTTTT 20385
>seq10
Length=1629031
Score = 82.4 bits (90), Expect = 8e-11
Identities = 80/102 (78%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 52051 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 51994
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
||| || |||||| ||| ||| | || ||| |||| |||
Sbjct 51993 TTCAAATCCCACAGCTGTCAATATTTTTTTGTTTTTTTAGTT 51952
>seq6
Length=1953702
Score = 82.4 bits (90), Expect = 8e-11
Identities = 74/92 (80%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | |||
Sbjct 623142 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 623201
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTA 126355
||||||| || ||||| |||||| ||| |||
Sbjct 623202 TGGGTTCAAATCCCACTTCTGACATATTTTTA 623233
>seq3
Length=2329960
Score = 82.4 bits (90), Expect = 8e-11
Identities = 69/84 (82%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 2104098 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 2104041
Query 126325 GGGTTCGAACCCCACACCTGACAA 126348
|||||| || |||||| ||| |||
Sbjct 2104040 GGGTTCAAATCCCACAGCTGTCAA 2104017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556316037000880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |