Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq66 217 2e-51 seq40 208 8e-49 seq126 104 3e-17 seq14 100 3e-16 seq51 91.5 2e-13 seq22 91.5 2e-13 seq3795 86.0 7e-12 seq693 84.2 2e-11 seq831 82.4 8e-11 seq499 82.4 8e-11 seq34 82.4 8e-11 seq10 82.4 8e-11 seq6 82.4 8e-11 seq3 82.4 8e-11 >seq66 Length=1001823 Score = 217 bits (240), Expect = 2e-51 Identities = 606/910 (67%), Gaps = 40/910 (4%) Strand=Plus/Minus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || |||||||||||| | ||||||||||| || ||||| |||| | ||| ||| | Sbjct 953394 TTTCTGATATTCCCCAACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTGAAGAGAGATCAA 953335 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTA--C 92917 | || | | | ||| || | || ||| ||| | | | || | | Sbjct 953334 CTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCAC--ACCCAAGCGCAGCC 953277 Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 || | ||||| || ||||| || || |||||| ||||| ||||| ||||| |||| Sbjct 953276 AAAAGCCTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACC 953217 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || |||||| || | || |||| ||| || ||||||| | || ||||||| | | Sbjct 953216 AGCTTTACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACG 953157 Query 93038 ATTT-CTA---TTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCA 93093 ||| || || ||| || | || || || || | | ||| | |||||| ||||| Sbjct 953156 ATTGACTGGACTTTCTCCAC-ACTTAGT--TTCTTCTTCAACA-AGCTGTACAGCAAGCA 953101 Query 93094 CGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153 || ||||| || | ||||||||||| ||||||| ||| || ||| ||||| || Sbjct 953100 GGCGAAGTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAATCC 953041 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTA 93212 || | | || || || |||||||| |||| || |||| ||||| || || || || | Sbjct 953040 GGGCATTAACCCGCGCTTTTTGAGCCAGAATA-TGGAGCAGAAACTTCCGGAGAAGAAGA 952982 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATT-TGCGGAATTACTGC 93269 | ||||| ||| || || || | | | |||||||| ||| |||| | | Sbjct 952981 TCCCTTCAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCG------CCGT 952928 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 |||||| | ||||| || ||||| ||||| | || || | || ||||| || Sbjct 952927 CAATCCATCGGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATTGCTC 952868 Query 93330 TAAATAGGT---AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 || |||| | | || || || ||| ||||| || || | | ||||| | Sbjct 952867 GGAAGAGGTGGGATTTAAGC---TCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAGT 952811 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 ||||||| || |||| || || ||||| |||||||| |||||||| | || || | Sbjct 952810 ACATTTCGGAGTGGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCTCAG 952751 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 | ||| || |||| ||||| | |||||||||| |||||| || ||||| | Sbjct 952750 CAACCTGGACCTCTTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGGAGG 952691 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTAT 93563 | || || || || | ||||| | ||||| |||| ||| || | | ||| | | Sbjct 952690 CGGCGAAGAAGGCGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGGTTT 952631 Query 93564 CCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621 |||||| ||| | |||| ||| || || |||||||| | ||||| || || ||||| Sbjct 952630 CCCAATGACGGTT--GTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTTC 952573 Query 93622 TGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGAT 93680 || || |||||||| ||||| || | | | |||| ||||| || || ||| || | || Sbjct 952572 AGCCTTCTTGTACATCTCCCAGATTTGTGGGTATTTGATTGGGAACAT-ACAGAATCTAT 952514 Query 93681 TAGGGTTATC 93690 ||||| || Sbjct 952513 CTGGGTTTTC 952504 >seq40 Length=1826671 Score = 208 bits (230), Expect = 8e-49 Identities = 526/788 (67%), Gaps = 30/788 (4%) Strand=Plus/Minus Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 || ||||||||||| ||||| || ||||||||| ||| | ||||| ||||| |||| Sbjct 1766962 AACAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAGTTCATCCCTACC 1766903 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||| || || | || |||| ||| || ||||| | || ||||||| || Sbjct 1766902 AGCTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACCGCTTCTTCCACT 1766843 Query 93038 ATTTCTA----TTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCA 93093 ||| | || ||| || || | | |||| | | ||| | |||||| ||||| Sbjct 1766842 ATTGCCTGAACTTTCTCCACACTTAGCT---TTTTCTTCAACA-AGCTGTACAGCAAGCA 1766787 Query 93094 CGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153 ||||| || || | ||||| || || ||||||||||| || ||| ||||| || Sbjct 1766786 GGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAATCC 1766727 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTA 93212 || | | || || || || ||||| ||||| || ||| || || ||||| || || | Sbjct 1766726 GGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGA-GCAGAAGCTTCCAGAGAAGAAAA 1766668 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT-- 93270 | ||||| || || || || | || | |||||| || | ||| ||||| Sbjct 1766667 TCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAA-------GGATT-CTGCTCC 1766616 Query 93271 ---GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||||||| | |||||||| ||||| ||||| | ||| || | || ||||| || Sbjct 1766615 GTCGATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGATTGC 1766556 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | || |||| | ||| || ||| ||||| || || | | || ||||| Sbjct 1766555 GCGGAAGAGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGGAATA 1766496 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||||| || |||| || || || || |||||||| |||||||| | || || | Sbjct 1766495 CATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCCTCTGC 1766436 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 | ||| || |||| ||||| | |||||||||| ||| || || || || || Sbjct 1766435 TACCTGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCAGAGGC 1766376 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATC 93564 || || || || | || || | || || |||| ||| || | | || || || Sbjct 1766375 GGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATGTTTTC 1766316 Query 93565 CCAATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||| | | | | | || | ||| |||||||||||||| | ||||| || || ||||| | Sbjct 1766315 CCAGTGGCGGTTG-TCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCTTCAG 1766257 Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTA 93682 |||| |||||||| ||||| || | | |||||| ||||| || || ||| || | || Sbjct 1766256 CTTTCTTGTACATTTCCCAGATTTGTGGATATTTGATTGGGAACAT-ACAGAATCTATCT 1766198 Query 93683 GGGTTATC 93690 ||||| || Sbjct 1766197 GGGTTTTC 1766190 >seq126 Length=799273 Score = 104 bits (114), Expect = 3e-17 Identities = 88/105 (84%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || | || | || Sbjct 485164 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTCACGAGGGC 485105 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA-TTATTGGAATTTTT 126366 ||||||||||||||||| |||||||| | ||||| ||||||| Sbjct 485104 GTGGGTTCGAACCCCACTTCTGACAAAAAATTTATT--AATTTTT 485062 >seq14 Length=1475405 Score = 100 bits (110), Expect = 3e-16 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 741107 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 741166 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||| |||||||| Sbjct 741167 GTGGGTTCGAACCCCACTTCTGACAAA 741193 >seq51 Length=1127560 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 525767 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 525826 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||| || ||||| |||||||| Sbjct 525827 GTGGGTTCAAATCCCACTTCTGACAAA 525853 >seq22 Length=1254882 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 177066 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 177125 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||||||||||| Sbjct 177126 GTGGGTTCAAATCCCACTTCTGACAAATTATT 177157 >seq3795 Length=17394 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | ||| Sbjct 5914 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGCAAGAGGGCG 5973 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || ||||| |||||||| Sbjct 5974 TGGGTTCAAATCCCACTTCTGACAAA 5999 >seq693 Length=120835 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 2074 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 2015 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||| || ||||| |||||||||| Sbjct 2014 TGGGTTCAAATCCCACTTCTGACAAATT 1987 >seq831 Length=481116 Score = 82.4 bits (90), Expect = 8e-11 Identities = 73/89 (82%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | ||| Sbjct 28134 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGCAAGAGGGCG 28075 Query 126324 TGGGTTCGAACCCCACACCTGACA-AATT 126351 ||||||| || ||||| |||||| |||| Sbjct 28074 TGGGTTCAAATCCCACTTCTGACATAATT 28046 >seq499 Length=186503 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/94 (80%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | Sbjct 22511 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGG 22452 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||||||| || ||||| |||||| || ||| Sbjct 22451 CGTGGGTTCAAATCCCACTTCTGACATTTTTTTA 22418 >seq34 Length=1960455 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 20282 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 20341 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||| || ||||| ||||| || ||| || ||||||| || Sbjct 20342 TGGGTTCAAATCCCACTTCTGAC--ATAATTTTTCCAATTTTTTTT 20385 >seq10 Length=1629031 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/102 (78%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 52051 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 51994 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| ||| | || ||| |||| ||| Sbjct 51993 TTCAAATCCCACAGCTGTCAATATTTTTTTGTTTTTTTAGTT 51952 >seq6 Length=1953702 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 623142 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 623201 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||||| || ||||| |||||| ||| ||| Sbjct 623202 TGGGTTCAAATCCCACTTCTGACATATTTTTA 623233 >seq3 Length=2329960 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 2104098 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 2104041 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 2104040 GGGTTCAAATCCCACAGCTGTCAA 2104017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556316037000880