Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq329 118 8e-22 seq1435 89.7 4e-13 seq865 82.4 5e-11 >seq329 Length=298387 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || ||| | || || || || ||||| ||||| |||| || Sbjct 180313 ATGCAAATCTTTGTGAAGACACTTACTGGAAAGACGATTACTTTGGAAGTGGAAAGTTCA 180372 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || ||| |||||||||||| | || | | || Sbjct 180373 GATACAATTGATAATGTTAAGACTAAGATTCAGGATAAAGAGGGTATCCCACCAGATCAG 180432 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||||| || ||| | || ||| | |||| |||| ||||| ||| Sbjct 180433 CAGAGGATTATCTTTGCTGGGAAGCAATTGGAGGATGGGAGAACTTTGGCAGATTATAAT 180492 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATA 22063 ||||||||||| |||||||||||| | || | ||| | || || || || Sbjct 180493 ATTCAGAAGGAGTCTACTCTTCATCTTGTTCTTCGTCTGCGTGGGGGTTA 180542 Score = 109 bits (120), Expect = 4e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || | || || || |||||||| | || ||| | | Sbjct 180085 ATGCAGATCTTTGTTAAGACCCTTACTGGTAAGACCATTACTCTTGAGGTTGAAACTTCT 180144 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | || ||||| || ||| ||||||||| ||| | ||||| | Sbjct 180145 GACACGATTGAAAATGTTAAGACCAAGATTCACGATAAAGAAGGTATTGCACCTG---AT 180201 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||||| ||||||||||| ||||| |||| ||| | |||| | || || || Sbjct 180202 CAACAAAGACTCATCTTTGCTGGGAAACAGTTAGAGGATGGTAGAACTCTTGCAGACTAT 180261 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||| |||||||| ||| ||||| | ||||| |||| || Sbjct 180262 AATATTCAAAAGGAGTCTACTCTGCATTTGGTACTTCGTTTGAGAGGTGG 180311 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 21824 ATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAAC 21883 ||| |||| | ||||||| ||| | || ||| | || || ||||| || || | ||| Sbjct 179848 ATATTGCAGA-TGCAAATCTTTGTGAAGACACTTACAGGGAAAACAATCACTCTAGAAGT 179906 Query 21884 GGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACC 21943 || | || || | | | || ||||| || || || ||||| || | || Sbjct 179907 AGAGAGTTCTGATACAATTGACAATGTTAAGACCAAGATCCAAGACAAAGAAGGGATTCC 179966 Query 21944 TGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGC 22003 | | | |||||||| || ||||||||||| |||||||| || ||| || ||| | || Sbjct 179967 TCCAGATCAACAGAGGCTAATCTTTGCTGGTAAACAACTCGAGGATGGAAGAACCCTTGC 180026 Query 22004 CGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||| |||||||| ||||| ||| | || | ||| || | || || Sbjct 180027 AGATTACAACATTCAAAAGGAATCAACTCTCCATTTAGTTCTTCGTCTAAGGGGTGG 180083 >seq1435 Length=543809 Score = 89.7 bits (98), Expect = 4e-13 Identities = 175/257 (68%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 || ||||||||| || | ||||| |||| || |||||||| ||| | ||| |||| | Sbjct 91723 CACAATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGAATC 91782 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | | | | || || || || |||||||| | || | Sbjct 91783 CTCCGATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCGGA 91842 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| || | || ||||| || || || ||| |||| ||| || ||| | |||||||| Sbjct 91843 CCAGCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGATTA 91902 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG--ATATTAA 22067 ||| |||||||||||||| || ||||| |||| | ||| | || || || ||| | Sbjct 91903 CAACATTCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTCGTGGTGGGACTATGAT 91962 Query 22068 TAA--TAAAAACCATAA 22082 ||| | |||||| ||| Sbjct 91963 TAAGGTCAAAACCCTAA 91979 >seq865 Length=406355 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| || |||||||| || || || || |||||| | ||| | || |||| Sbjct 5986 ACCAGCAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGATGGGAGGACTCTTGCGGATT 5927 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||| || ||||| ||||| |||||| |||| | ||||| | |||||| Sbjct 5926 ACAATATCCAAAAGGAGTCTACCCTTCATTTGGTGCTTCGTTTGAGGGGAGGA 5874 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || |||| || || ||||| ||| | || ||| | | Sbjct 7013 ATGCAGATCTTTGTGAAGACTCTAACAGGGAAGACCATCACCCTCGAGGTTGAAAGCTCC 6954 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||||||| ||||| ||||| | || | |||| Sbjct 6953 GACACCATTGACAACGTCAAGGCAAAAATTCAAGATAAGGAGGGCATTCCCCCAGACCAG 6894 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||||||||| || || || ||||| |||||| ||| | ||||| ||||| Sbjct 6893 CAAAGACTTATCTTCGCCGGAAAGCAACTTGAAGATGGCCGAACCCTTGCCGACTACAAC 6834 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||||||||| ||||| || Sbjct 6833 ATCCAGAAGGAATCAACTCTCCA 6811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357783214074748