Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq909 122 7e-23 seq37 116 3e-21 seq20 113 4e-20 seq865 100 2e-16 seq810 95.1 1e-14 seq329 95.1 1e-14 seq1435 89.7 4e-13 seq1099 84.2 2e-11 >seq909 Length=350832 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||| |||||||||||| | || || |||||||| ||||| || Sbjct 176306 GTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGTTTTCCG 176365 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||||||||| || ||||| || || |||||||| ||||| ||||| ||| Sbjct 176366 GCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTG 176425 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| |||| |||||| || || | ||| | ||||| || || || ||| Sbjct 176426 ACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTTAGGGTT 176485 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 176486 TTCACGAAAATCTGCAT 176502 >seq37 Length=1785839 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || |||||||| ||| | || | |||||| | ||||| || Sbjct 885898 GTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTTCCATCTTCCAACTGTTTTCCG 885839 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| || ||||||||||| || |||||||||||||| ||||| ||| Sbjct 885838 GCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTTG 885779 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| |||||| || || | ||| | ||||| ||||| || ||| Sbjct 885778 ACGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGGGTTATGGTTTTTCCGGTTAGGGTT 885719 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 885718 TTGACGAAGATCTGCAT 885702 >seq20 Length=1286389 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | || || |||||||| || || || Sbjct 250533 GTTGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCAAGCTGCTTTCCG 250474 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| ||||| |||||||| || || ||||| || Sbjct 250473 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATCTTGGCCTTG 250414 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| |||| |||||| || || | ||| | ||||| || || || ||| Sbjct 250413 ACATTGTCAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCCGTTAGGGTT 250354 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 250353 TTCACGAAAATCTGCAT 250337 >seq865 Length=406355 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | ||| | ||||| || || || |||||||| || Sbjct 6100 ATACCACCACGAAGACGGAGAACCAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCA 6159 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||||||| || || || || | || | | ||| ||||| || Sbjct 6160 GCCAAAGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGG 6219 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||| || | | |||| |||||| | || Sbjct 6220 GGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCA 6279 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| |||| ||||| || ||||||||||| Sbjct 6280 ACCTCCAAGGTAATAGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 6329 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | || || |||||||||||| || || Sbjct 6817 GTTGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCAAGTTGCTTTCCG 6876 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | || ||||| || |||||||| || || || ||| ||| || Sbjct 6877 GCGAAGATAAGTCTTTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGAATTTTTGCCTTG 6936 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | ||| || || | ||| | || || || || ||||| Sbjct 6937 ACGTTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTCCCTGTTAGAGTC 6996 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 6997 TTCACAAAGATCTGCAT 7013 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || |||||||||||||| Sbjct 5644 ATACCACCACGAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCA 5703 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| ||| ||||||||||| ||||| |||| | | ||| ||||| || Sbjct 5704 GCCAAGGTGCGACCATCCTCAAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGG 5763 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| ||||| | | || Sbjct 5764 GGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCAATCGTGTCCGAGCTCTCA 5823 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || |||| || || |||||||||||||| Sbjct 5824 ACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAAATCTGCAT 5873 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || |||||| ||||||||| || || || Sbjct 6361 GTGGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCAAGCTGCTTTCCG 6420 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || || || ||||| || || || || ||| Sbjct 6421 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCTTGGATTTTGGCCTTT 6480 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | || || |||| ||| | || || || || ||||| Sbjct 6481 ACGTTGTCAATAGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTGTAAGAGTC 6540 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 6541 TTAACAAAAATCTGCAT 6557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | ||||| || ||||| || |||||||| | ||| | ||||||| Sbjct 5893 ACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTCCCATCTTCA 5952 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || || |||| || | ||| ||||| || || |||||||| ||||| Sbjct 5953 AGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGG 6012 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | |||| |||||| | || || |||| ||| | || ||| Sbjct 6013 ATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTG 6072 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || || || ||||||||||| Sbjct 6073 CCAGTCAAGGTCTTGACGAAAATCTGCAT 6101 >seq810 Length=562993 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || || |||||| ||| |||||||| ||||| Sbjct 115336 GTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCCTCAAGTTGCTTACCC 115395 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | | ||| ||||| || ||||| || || || || ||| ||| || Sbjct 115396 GCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATTTTTGCCTTG 115455 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | || || || | ||| | || || ||||| || || Sbjct 115456 ACATTGTCAATGGTGTCGGAGCTCTCCACCTCTAAGGTGATGGTCTTTCCGGTGAGGGTC 115515 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 115516 TTGACAAAAATCTGCAT 115532 >seq329 Length=298387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||||||||| | || ||||| ||||||||||||||||| | || | ||| || Sbjct 180066 AACTAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCAAGGGTTCTTCCATCCTC 180007 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 |||||||||||||| |||| || | |||||| || |||||||| ||||||||||| Sbjct 180006 GAGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGGAGGAATCCCTTCTTTGTC 179950 >seq1435 Length=543809 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||||||| | || | ||| || | ||| || || Sbjct 91923 GTCGATTCCTTCTGAATGTTGTAATCGGCGAGTGTTCTTCCATCCTCTAATTGCTTCCCG 91864 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || || || |||||||| || || || |||||||| ||||| ||| Sbjct 91863 GCGAAGATCAGGCGTTGCTGGTCCGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTG 91804 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | || |||| |||||| || || | ||| | ||||| || || || ||| Sbjct 91803 ACGTTGTCGATTGTATCGGAGGATTCCACTTCTAGGGTTATGGTTTTCCCAGTTAGGGTT 91744 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||| ||||| Sbjct 91743 TTCACGAAAATTTGCAT 91727 >seq1099 Length=206994 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| | ||||| ||| |||||||| || || Sbjct 75097 GTTGACTCCTTCTGGATGTTGTAATCAGCGAGGGTACGTCCATCCTCAAGTTGCTTTCCG 75038 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| ||||| || ||||| |||||||| || ||||| || ||| || || || Sbjct 75037 GCAAAGATCAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTATCTTGGATC-TTGGTCTT 74979 Query 114306 AGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | |||| ||||||| || || |||| || | ||||| ||||| ||||| Sbjct 74978 AACATTGTCAATAGTGTCGGAACTCTCAACCTCCAGAGTTATAGTTTTTCCGGTAAGAGT 74919 Query 114365 TTTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 74918 CTTGACGAAGATTTGCAT 74901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419733668194344