Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq66 199 7e-46 seq40 165 2e-35 >seq66 Length=1001823 Score = 199 bits (220), Expect = 7e-46 Identities = 315/448 (70%), Gaps = 15/448 (3%) Strand=Plus/Plus Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 || || ||||||||||||||||| |||||||||||| || || || ||| ||| ||| Sbjct 952672 ATCCTCGCCTTCTTCGCCGCCTCCGACGGCATAGTCCTAGAAAATCTCGCCGGCAGATTC 952731 Query 42480 ATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 ||||||||||| ||| |||||||||| ||||||||| ||||| ||||| || || Sbjct 952732 ATGAAAGAGGTCCAGGTTGCTGAGGCGCGCGCCTTCTACGGGTTCCAAATAGCAATCGAA 952791 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG 42599 ||| | ||||| || ||||| | || || | || |||||| || | ||| Sbjct 952792 AACATCCACTCCGAAATGTACTCTCTCCTCCTAGAAACCTACATCAAAGA---CTCAGAG 952848 Query 42600 CGTAA---CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 | ||| | || ||| || || ||||| || |||||| | |||||||| ||||| Sbjct 952849 CTTAAATCCCACCTCTTCCGAGCAATCGAGACCATCCCCTGCGTGAAGAAGAAAGCGGAG 952908 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGC--AACG-TTCGGCGAGAGGCTGGTAGCC 42713 ||||| ||| ||||| || || ||| || | || | ||||||||| | || Sbjct 952909 TGGGCCCTCCGATGGATTGA------CGGCGCAGAATGCTTTGCCGAGAGGCTAATTGCT 952962 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 || | ||| || || ||||||||||| || ||| |||||| ||||||||||| Sbjct 952963 TTCGCTTGCGTTGAAGGGATCTTCTTCTCCGGAAGTTTCTGCTCCATATTCTGGCTCAAA 953022 Query 42774 CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || | || ||||||||| | |||||||| ||||| || || | ||||| ||| Sbjct 953023 AAGCGCGGGTTAATGCCCGGATTAACCTTCTCAAACGAGCTGATATCGCGAGACGAAGGG 953082 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGT 42861 || || | ||||| |||||| | |||| Sbjct 953083 CTTCACTGTGACTTCGCCTGCTTGCTGT 953110 >seq40 Length=1826671 Score = 165 bits (182), Expect = 2e-35 Identities = 306/447 (68%), Gaps = 9/447 (2%) Strand=Plus/Plus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 |||| || |||||||||||||||||||||||||| ||| || || || ||| || | Sbjct 1766356 ACATCCTCGCCTTCTTCGCCGCCTCTGACGGCATCGTCCTCGAAAATCTCGCCGGAAGAT 1766415 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 |||||||||| || ||| ||||||||| ||||||||||||||| || ||||| | Sbjct 1766416 TCATGAAAGACGTCCAGGTAGCAGAGGCGCGCGCCTTCTACGGCTTCCAAATCGCCATTG 1766475 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 | ||| | ||||| || |||| || || | | || |||||| || | || Sbjct 1766476 AAAACATCCACTCGGAAATGTATTCCCTCCTCTTAGAAACCTACATCAAAGA---CTCCG 1766532 Query 42598 AGCGTAA---CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 | | ||| | || ||| || || ||||| || ||||| | |||||||| || | Sbjct 1766533 ACCTTAAATCCCACCTCTTCCGCGCAATCGAGACCATCCCCTGTGTGAAGAAGAAAGCAG 1766592 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 | ||||| ||| |||||||| | | || | | |||| ||| || || | || | Sbjct 1766593 ATTGGGCCCTCCGATGGATCGACGGAGCAGA---ATCCTTCGCCGAAAGACTTATTGCTT 1766649 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | | || || || || |||||||| || |||| |||||| |||||||| || Sbjct 1766650 TCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGCTTCTGCTCCATATTCTGGCTGAAAA 1766709 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 || | || ||||||||| | |||||||| ||||| | || | || || |||| Sbjct 1766710 AGCGCGGGTTAATGCCCGGATTAACCTTCTCAAACGAGTTGATATCGCGTGATGAAGGGC 1766769 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGT 42861 | || | || ||||||||| | |||| Sbjct 1766770 TTCACTGTGATTTTGCCTGCTTGCTGT 1766796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943415376569120