Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq37 149 1e-30 seq1663 143 6e-29 seq1435 129 1e-24 seq865 114 3e-20 seq122 113 1e-19 seq1099 109 1e-18 seq810 105 2e-17 seq329 96.9 8e-15 >seq37 Length=1785839 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || |||||||| || || | ||| ||||| || |||||||| ||||| Sbjct 885893 TTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTTCCATCTTCCAACTGTTTTCCGGCGAA 885834 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || || ||||| |||||| |||||||| || ||||| || ||||| ||||| Sbjct 885833 GATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTT 885774 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||||||||| || || || || || ||||| || || ||||| Sbjct 885773 GTCGATTGTGTCGGAGGATTCTACTTCTAGGGTTATGGTTTTTCCGGTTAGGGTTTTGAC 885714 Query 288462 GAATATCTGCATTATGT 288478 ||| ||||||||| ||| Sbjct 885713 GAAGATCTGCATTTTGT 885697 >seq1663 Length=237253 Score = 143 bits (158), Expect = 6e-29 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | || || || ||||| || |||||||| Sbjct 10437 CCACCACGAAGGCGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 10378 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || |||||||||||||| | |||||||| |||||||| |||||||| || ||| Sbjct 10377 AGTGTGCGTCCGTCTTCAAGCTGTTTTCCGGCGAAGATAAGACGCTGCTG---GTCTGGG 10321 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || || ||||| || |||||||| || || || | || |||||| Sbjct 10320 GGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCT 10261 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || |||||||| || || || ||||| ||||||||| Sbjct 10260 ACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAAGATCTGCATT 10210 >seq1435 Length=543809 Score = 129 bits (142), Expect = 1e-24 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || || |||||||| || | ||| || |||||||| || || ||||| Sbjct 91918 TTCCTTCTGAATGTTGTAATCGGCGAGTGTTCTTCCATCCTCTAATTGCTTCCCGGCGAA 91859 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| || || || ||||||||| ||||| || ||||| || ||||| ||||| Sbjct 91858 GATCAGGCGTTGCTGGTCCGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACGTT 91799 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | |||| ||||| ||||| || || || || ||||| || || || || || Sbjct 91798 GTCGATTGTATCGGAGGATTCCACTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCAC 91739 Query 288462 GAATATCTGCATTATG 288477 ||| || |||||| || Sbjct 91738 GAAAATTTGCATTGTG 91723 >seq865 Length=406355 Score = 114 bits (126), Expect = 3e-20 Identities = 145/197 (74%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || |||||||| || || || ||||| || | ||||| || |||||| Sbjct 7443 TCTTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCCTCGAGCTGTTTCCCGGCGAAG 7502 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| || || || ||||| ||||| || ||||| ||| Sbjct 7503 ATCAGCCTCTGCTG---GTCTGGGGGAATACCCTCCTTATCTTGGATCTTAGCTTTGACG 7559 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| || || ||||| ||||| ||||| ||||| || || Sbjct 7560 TTGTCGATTGTGTCGGAACTC---TCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTT 7616 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| || ||||| Sbjct 7617 TTCACGAAGATTTGCAT 7633 Score = 111 bits (122), Expect = 4e-19 Identities = 157/218 (72%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| ||| ||| || ||||| || ||||| || | || || || ||| Sbjct 6346 AGCACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCT 6405 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || ||||| || ||||||| | ||| || |||||| |||||||| ||| Sbjct 6406 TCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGG---TCTGGGGGGATTCCTTCCTTA 6462 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTG 288435 || |||||||| || || ||||| || |||| || |||| || || || | ||| Sbjct 6463 TCTTGGATTTTGGCCTTTACGTTGTCAATAGTGTCGGAGCTC---TCCACCTCCAAGGTG 6519 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || |||||||| || || |||||||| Sbjct 6520 ATGGTCTTTCCTGTAAGAGTCTTAACAAAAATCTGCAT 6557 Score = 93.3 bits (102), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||||||||| || || || || || | || ||||| | || |||||||| ||| Sbjct 5911 TCCTTTTGGATATTGTAATCCGCAAGAGTCCTCCCATCTTCAAGCTGCTTTCCTGCAAAG 5970 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || ||| ||||| ||||| || |||||||| || || || || Sbjct 5971 ATCAGCCTCTGCTG---GTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACA 6027 Query 288400 TTTTCTATAGAATCGCTCGATTCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 || || || | | || | ||| || || | || || ||||| || |||| |||| Sbjct 6028 TTGTCAATGG--TGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTGCCAGTCAAGGTCT 6085 Query 288458 TGACGAATATCTGCAT 288473 ||||||| |||||||| Sbjct 6086 TGACGAAAATCTGCAT 6101 >seq122 Length=796376 Score = 113 bits (124), Expect = 1e-19 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 288291 GATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACG 288350 ||| | ||||||||||| || |||| ||||| | |||||| | ||||||| ||||| Sbjct 748958 GATGTCATAGTCGGCGACTGTTCGTCGGTCTTGAACCTGTTTTTCGACGAAGATAAGACG 748899 Query 288351 CTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGA 288410 || || |||||||||||| ||||| ||||| || |||||||| || || || | Sbjct 748898 TTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGGATCTTGGCTTTCACATTGTCGATTGT 748839 Query 288411 ATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470 || |||||||| || || || || || |||||||| ||||| || ||||| | | Sbjct 748838 GTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGAGTTTTCACGAAGGTATA 748779 Query 288471 CATTATG 288477 |||| || Sbjct 748778 CATTTTG 748772 >seq1099 Length=206994 Score = 109 bits (120), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| || || |||||||| || || || || Sbjct 75583 CCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCCGCA 75524 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || ||||| ||||| || ||||| | | ||| ||| |||||| Sbjct 75523 AGAGTCCTCCCATCCTCCAATTGCTTTCCAGCAAAGATTAACCTCTGCTGA---TCTGGG 75467 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| || |||||||| ||||| || || || || || || | || |||| Sbjct 75466 GGAATTCCCTCCTTATCCTGAATTTTAGCCTTGACATTGTCAATGGTGTCTGAGCTC--- 75410 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || |||||||| |||| ||||||||||| ||||||||| Sbjct 75409 TCAACCTCCAGAGTAATAGTCTTCCCAGTCAAGGTCTTGACGAAAATCTGCATT 75356 Score = 107 bits (118), Expect = 5e-18 Identities = 156/218 (72%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| || || || ||||| || || || ||||| || ||||| || Sbjct 75112 AGCACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCGAGGGTACGTCCATCC 75053 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | ||| ||||| || ||||||||||| || || ||||| ||||| |||||| Sbjct 75052 TCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGG---TCTGGAGGAATTCCCTCTTTA 74996 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTG 288435 || ||||| || | || || || || |||| ||| ||| || || || || || Sbjct 74995 TCTTGGATCTTGGTCTTAACATTGTCAATAGTGTCGGAACTC---TCAACCTCCAGAGTT 74939 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||||||||| || ||||| Sbjct 74938 ATAGTTTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 74901 Score = 104 bits (114), Expect = 6e-17 Identities = 165/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | |||| ||| || ||||||| || || || ||||| || || || || Sbjct 75356 TCCACCCCTTAGTCGAAGCACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCTGC 75297 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || ||||| | || ||||| || || |||| | ||| ||| ||||| Sbjct 75296 AAGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAATATCAACCTCTGCTGA---TCTGG 75240 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419 | || || || || ||||| || || || || || || || || | || |||| Sbjct 75239 GGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATTGTGTCTGAGCTC-- 75182 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || |||||||| |||| ||||||||| ||||||||||| Sbjct 75181 -TCAACCTCCAGAGTAATAGTCTTCCCAGTCAAAGTCTTGACAAATATCTGCAT 75129 >seq810 Length=562993 Score = 105 bits (116), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||||| || || || || || || | |||||||| |||||| Sbjct 115798 TCCTTCTGGATGTTGTAATCGGCAAGAGTTCGGCCATCCTCGAGCTGTTTTCCGGCGAAG 115857 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | || || |||||| || || || ||||| |||||||| || || ||| Sbjct 115858 ATCAGCCTTTGCTG---GTCTGGGGGAATACCCTCCTTATCTTGGATTTTAGCCTTGACG 115914 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| |||||||| ||||| || || || || || || || Sbjct 115915 TTGTCAATGGTGTCGGAACTTTCGACTTCGAGGGTGATGGTTTTTCCAGTGAGGGTTTTC 115974 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 115975 ACGAAGATCTGCATT 115989 >seq329 Length=298387 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||||||||| || || || | || || ||||| ||||| || || ||| Sbjct 180275 TCCTTTTGAATATTATAGTCTGCAAGAGTTCTACCATCCTCTAACTGTTTCCCAGCAAAG 180216 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| | || || ||||||||||| || || || | || || ||| Sbjct 180215 ATGAGTCTTTGTTGATCAGGTGCAATACCTTCTTTATCGTGAATCTTGGTCTTAACATTT 180156 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | ||| || || || || || ||||| || || || ||||| || Sbjct 180155 TCAATCGTGTCAGAAGTTTCAACCTCAAGAGTAATGGTCTTACCAGTAAGGGTCTTAACA 180096 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 180095 AAGATCTGCAT 180085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178471522931636