Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq865 100 3e-16 seq810 95.1 1e-14 seq20 93.3 5e-14 seq1663 91.5 2e-13 seq329 84.2 2e-11 >seq865 Length=406355 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || ||||| | ||||||||| | || ||||||||| ||||||||||| || Sbjct 5875 CCTCCCCTCAAACGAAGCACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 5934 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||||| | | || || |||||||| || || || || || | ||||||||| | || Sbjct 5935 AGAGTCCTCCCATCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 5994 Query 42102 ACGCTCTCCTTGTCCATGATTTT 42124 | || ||||||||| ||| || Sbjct 5995 ATGCCTTCCTTGTCCTGGATCTT 6017 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||| | ||| | || | ||| ||| || || || ||||| || || Sbjct 7407 CCTCCCCTGAGACGGAGCACAAGGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCGGCT 7466 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || ||||| || || ||||| || || | ||||||||| | || Sbjct 7467 AGGGTACGGCCGTCCTCGAGCTGTTTCCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 7526 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCG---CTCGATTC 42157 | | |||||| || ||| || ||||| ||| | | | |||||| ||| || Sbjct 7527 ATACCCTCCTTATCTTGGATCTTAGCTTTGA-CGTTGTCGATTGTGTCGGAACTC---TC 7582 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||||| ||||| || || || || || ||||||||||| Sbjct 7583 GACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 7633 >seq810 Length=562993 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || ||||| | ||||| || | || ||| || || ||||||||||| || Sbjct 115078 CCTCCCCTCAAACGAAGAACCAAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCGCA 115137 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||||| | | || || |||||||| || ||||| || | | ||||||||| | || Sbjct 115138 AGAGTCCTCCCATCCTCCAGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGA 115197 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | || |||||||| | ||| | || | | | | | | | | ||||| |||| || Sbjct 115198 ATGCCCTCCTTGT-CTTGAATCTTCGCCTTAACATTGTCGATGGTGTCTGAGCTC---TC 115253 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||||||| || ||||| | ||||| || || || ||||| Sbjct 115254 AACCTCCAACGTGATGGTCTTTCCCGTCAAGGTCTTGACGAAAATCTGCAT 115304 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||||| || ||| | || || || ||||| ||||| || Sbjct 114885 CTCCTTCTGAATGTTGTAATCAGCCAAGGTACGCCCATCCTCAAGTTGCTTCCCAGCAAA 114944 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | || ||||||||| | || | | |||||||||| ||| || || | | Sbjct 114945 GATCAATCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 115004 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||| || |||| ||||| || | |||||||| || || || | ||||| Sbjct 115005 ATCAATCGTATCAGAGCTC---TCCACCTCTAGGGTGATGGTCTTTCCGGTCAAGGTCTT 115061 Query 42194 TACAAAGATTTGCATT 42209 ||||| || |||||| Sbjct 115062 CACAAAAATCTGCATT 115077 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| || ||||| || | || || ||||| || || ||||| Sbjct 115797 CTCCTTCTGGATGTTGTAATCGGCAAGAGTTCGGCCATCCTCGAGCTGTTTTCCGGCGAA 115856 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||||| | || | | |||||| || |||||| |||| ||| Sbjct 115857 GATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATTTTAGCCTTGA-CGT 115915 Query 42137 CGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | || | ||||| ||| || |||| ||||||||||| || || || || || | Sbjct 115916 TGTCAATGGTGTCGGAACTTTCGACTTCGAGGGTGATGGTTTTTCCAGTGAGGGTTTTCA 115975 Query 42196 CAAAGATTTGCATT 42209 | ||||| |||||| Sbjct 115976 CGAAGATCTGCATT 115989 >seq20 Length=1286389 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 250527 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAG 250468 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | || ||||| || ||| || |||| | Sbjct 250467 ATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATCTTGGCCTTGACATTG 250408 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || ||| ||||| || || | || |||||||| |||||||| || || || Sbjct 250407 TCAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCCGTTAGGGTTTTCACG 250348 Query 42198 AAGATTTGCATTTT 42211 || || |||||||| Sbjct 250347 AAAATCTGCATTTT 250334 >seq1663 Length=237253 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 10402 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCGGCGAA 10343 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||| ||| || ||| | | Sbjct 10342 GATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATT 10283 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | || |||||||| || ||||| || || || Sbjct 10282 GTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCAC 10223 Query 42197 AAAGATTTGCATTTT 42211 ||||| |||||||| Sbjct 10222 GAAGATCTGCATTTT 10208 >seq329 Length=298387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| ||||| | |||||||||| || ||||||||||||||| || || || Sbjct 180311 CCACCTCTCAAACGAAGTACCAAATGCAGAGTAGACTCCTTTTGAATATTATAGTCTGCA 180252 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | | || |||| ||| || ||||| || ||||||| || || || | | || Sbjct 180251 AGAGTTCTACCATCCTCTAACTGTTTCCCAGCAAAGATGAGTCTTTGTTGATCAGGT-GC 180193 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||| | ||| | || || || | | | | |||||| | ||| || Sbjct 180192 AATACCTTCTTTATCGTGAATCTTGGTCTTAACATTTTCAATCGTGTCAGAAGTTTCAAC 180133 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| || || || || ||||| |||||||| ||||| Sbjct 180132 CTCAAGAGTAATGGTCTTACCAGTAAGGGTCTTAACAAAGATCTGCAT 180085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542681388498080