Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq909 100 3e-16 seq329 95.1 1e-14 seq1663 93.3 4e-14 seq810 93.3 4e-14 seq20 91.5 1e-13 seq865 89.7 5e-13 >seq909 Length=350832 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| |||||||| |||||||| ||| | || || ||| || || ||||| |||| Sbjct 176307 TTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGTTTTCCGG 176366 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||| || ||||| || || || ||||| ||||| ||| || ||| | Sbjct 176367 CGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGA 176426 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 ||||| | | ||| |||| || || ||||| | || | ||||| ||||| || ||| Sbjct 176427 CATTGT-CGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTTAGGGTT 176485 Query 138598 TTTACAAAAATCTGCAT 138614 || || ||||||||||| Sbjct 176486 TTCACGAAAATCTGCAT 176502 >seq329 Length=298387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||| | ||||||||| | |||| ||||||||||||||||| || | || | Sbjct 180072 ACGAAGAACTAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCAAGGGTTCTTCC 180013 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||||||||||||||||| | | ||||||| | |||||| || ||||| || |||||||| Sbjct 180012 ATCCTCGAGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGGAGGAATCCCTTCTTT 179953 Query 138519 GTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTC 138576 ||| || | || || ||| |||| || | || || | ||| || || | || Sbjct 179952 GTC-TTGGATCTTGGTCTTAACATTG-TCAATTGTATCAGAACTCTCTACTTCTAGAGTG 179895 Query 138577 AGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| || || || || || ||||| || ||||| Sbjct 179894 ATTGTTTTCCCTGTAAGTGTCTTCACAAAGATTTGCAT 179857 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || ||||| | | |||||||||||||| || ||||| Sbjct 180311 CCACCTCTCAAACGAAGTACCAAATGCAGAGTAGACTCCTTTTGAATATTATAGTCTGCA 180252 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||| | ||||| || | | |||| || | ||||| || || | Sbjct 180251 AGAGTTCTACCATCCTCTAACTGTTTCCCAGCAAAGATGAGTCTTTGTTGATCAGGTGCA 180192 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||||||||| || |||| | || || |||| | ||| | ||||| | | || || Sbjct 180191 ATACCTTCTTTATC-GTGAATCTTGGTCTTAACATTTTCAATCGTGTCAGAAGTTTCAAC 180133 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || |||||||| || || || ||||| |||||||| Sbjct 180132 CTCAAGAGTAATGGTCTTACCAGTAAGGGTCTTAACAAAGATCTGCAT 180085 >seq1663 Length=237253 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||| || || ||||| |||| Sbjct 10404 GACTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCGGCG 10345 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || || ||||| ||||| ||| || ||| | | Sbjct 10344 AAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACA 10285 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | || || ||||| | || | ||||| || || || ||||| Sbjct 10284 TTG-TCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTT 10226 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 10225 CACGAAGATCTGCAT 10211 >seq810 Length=562993 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | || | || | | | |||||||| || ||||||||||| | Sbjct 115306 CCTCCCCTCAAACGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 115365 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| ||||| ||||| | | || | | ||| ||||| || || Sbjct 115366 AAAGTACGGCCATCCTCAAGTTGCTTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGA 115425 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| |||||| || |||| || | |||||||| ||||| Sbjct 115426 ATACCCTCCTTATC-CTGAATTTTTGCCTTGACATTG-TCAATGGTGTCGGAGCTCTCCA 115483 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || || || |||||||||||||| Sbjct 115484 CCTCTAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAAATCTGCAT 115532 >seq20 Length=1286389 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || |||||||||||| | || || ||| || || || || |||| Sbjct 250532 TTGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGG 250473 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| ||||| ||||| || ||||| || || ||| || || | Sbjct 250472 CGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATCTTGGCCTTGA 250413 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 ||||| | | ||| |||| || || ||||| | || | ||||| || || || ||| Sbjct 250412 CATTGT-CAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCCGTTAGGGTT 250354 Query 138598 TTTACAAAAATCTGCAT 138614 || || ||||||||||| Sbjct 250353 TTCACGAAAATCTGCAT 250337 >seq865 Length=406355 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | || | ||| | | | || ||||| || ||||||||||| | Sbjct 6331 CCTCCCCTCAAACGGAGCACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCC 6390 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || || || || |||| | |||| | | ||| ||||| || || Sbjct 6391 AAAGTACGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 6450 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || |||||| |||| | || | ||||||| ||||||| Sbjct 6451 ATTCCTTCCTTATCTTGGATTTTGGCCTTTACGTTGTCAATAGTGTCGGAGCTCTCCACC 6510 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || ||||| || |||||||||||||| Sbjct 6511 TCCAAGGTGATGGTCTTTCCTGTAAGAGTCTTAACAAAAATCTGCAT 6557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||| || || |||||||||||| | ||||| ||||||||| ||||| |||| Sbjct 7438 TTGACTCTTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCCTCGAGCTGTTTCCCGG 7497 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || | ||| ||||| || || ||||| || || || ||| || ||| | Sbjct 7498 CGAAGATCAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATCTTAGCTTTGA 7557 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||||| ||| ||||||| || | || || || || || |||| Sbjct 7558 CGTTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTT 7617 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 7618 TCACGAAGATTTGCAT 7633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495776918900640