Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1435 116 3e-21 seq909 113 3e-20 seq329 104 2e-17 seq1663 95.1 9e-15 seq865 91.5 1e-13 seq810 86.0 4e-12 seq1099 82.4 5e-11 >seq1435 Length=543809 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||||||| ||| |||| | || ||| Sbjct 91935 ACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGTGTTCTTCCATCCTCT 91876 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| || || ||| | |||| || || ||||| ||| ||||| || ||||| Sbjct 91875 AATTGCTTCCCGGCGAAGATCAGGCGTTGCTGGTCCGGTGGGATTCCCTCTTTGTCTTGG 91816 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| || | || || |||||| ||| || |||| ||| |||||||| Sbjct 91815 ATCTTGGCTTTGACGTTGTCGATTGTATCGGAGGATTCCACTTCTAGGGTTATGGTTTTC 91756 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||||||||| Sbjct 91755 CCAGTTAGGGTTTTCACGAAAATTTGCAT 91727 >seq909 Length=350832 Score = 113 bits (124), Expect = 3e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| |||||||||||| || ||| ||||||| | ||| Sbjct 176300 TGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGT 176359 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || | ||| || ||||| ||| || ||||||||||| || ||| Sbjct 176360 TTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTG 176419 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || |||||| ||| || |||| ||| |||||||| || || Sbjct 176420 GCTTTGACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTT 176479 Query 15154 AGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || ||||| ||||| ||| Sbjct 176480 AGGGTTTTCACGAAAATCTGCATTTTT 176506 >seq329 Length=298387 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||||||||| || || || || ||||| ||||||||||| || |||| | || || Sbjct 180066 AACTAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCAAGGGTTCTTCCATCCTC 180007 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | || | | |||||| || ||||| ||||| ||||| Sbjct 180006 GAGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTG 179947 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| | || ||| | || || ||||| | | ||||| |||| || || ||||| Sbjct 179946 GATCTTGGTCTTAACATTGTCAATTGTATCAGAACTCTCTACTTCTAGAGTGATTGTTTT 179887 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || ||||| |||||||| Sbjct 179886 CCCTGTAAGTGTCTTCACAAAGATTTGCAT 179857 >seq1663 Length=237253 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| || || || |||||||| ||| || | | ||||||| | ||| Sbjct 10413 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGT 10354 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || | |||||| ||||| || || ||||||||||| || ||| Sbjct 10353 TTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTG 10294 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || |||||| |||| ||| |||||||| || || Sbjct 10293 GCTTTCACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTT 10234 Query 15154 AGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || || || ||||| ||| Sbjct 10233 AGGGTTTTCACGAAGATCTGCATTTTT 10207 >seq865 Length=406355 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||||||||| || ||||| || |||||||| ||| | ||| | ||||| Sbjct 5893 ACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTCCCATCTTCA 5952 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || || | |||| | ||| ||||| || || ||||||||||| Sbjct 5953 AGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGG 6012 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || || || || | | || || || |||||||| || || Sbjct 6013 ATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTG 6072 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || ||||| |||||| Sbjct 6073 CCAGTCAAGGTCTTGACGAAAATCTGCATA 6102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || |||||||| || | | | | | ||||| | || Sbjct 6354 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCAAGCTG 6413 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || || | ||||| | ||| ||||| || ||||||||||| || ||||| Sbjct 6414 CTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCTTGGATTTT 6473 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||| | || ||||| ||| | || || || ||||| ||||| || ||||| Sbjct 6474 GGCCTTTACGTTGTCAATAGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTGT 6533 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || |||||||| |||||| Sbjct 6534 AAGAGTCTTAACAAAAATCTGCATA 6558 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || || || |||||||| ||| || ||| | ||||| Sbjct 6577 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCATCTTCA 6636 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || || | ||||| | ||| ||||| ||||| |||||||| || Sbjct 6637 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 6696 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || || ||| |||| || || | ||| ||||| || Sbjct 6697 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTC 6756 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| || ||||| || |||||| Sbjct 6757 CCTGTTAGAGTCTTCACAAAGATCTGCATA 6786 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| |||||||| || || || |||||||| || | | | | | ||||| Sbjct 6120 AACCAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTC 6179 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||| || | ||||| | ||| ||||| || || ||||||||||| Sbjct 6180 AAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTG 6239 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| || ||| | || || || || | | || || || |||||||| || || Sbjct 6240 AATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTT 6299 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||||| || ||||| ||||| Sbjct 6300 GCCAGTCAAGGTTTTGACGAAAATCTGCAT 6329 >seq810 Length=562993 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||||||||| ||||| || || |||||||| ||| | ||| | || || Sbjct 115095 AACCAAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCGCAAGAGTCCTCCCATCCTC 115154 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||| ||| | ||||| | ||| ||||| ||||| || |||||||| Sbjct 115155 CAGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTG 115214 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || ||| | || || || || | || || || || || ||||| || Sbjct 115215 AATCTTCGCCTTAACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAACGTGATGGTCTT 115274 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || ||||| ||||| Sbjct 115275 TCCCGTCAAGGTCTTGACGAAAATCTGCAT 115304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || || || |||||||| || | | | | | || || | ||| Sbjct 115330 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCCTCAAGTTGC 115389 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | ||||| | ||| ||||| ||||| || ||||| || |||||| Sbjct 115390 TTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATTTTT 115449 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || ||| | || || |||||||| ||||| || || || Sbjct 115450 GCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCTAAGGTGATGGTCTTTCCGGTG 115509 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| |||||| Sbjct 115510 AGGGTCTTGACAAAAATCTGCATA 115533 >seq1099 Length=206994 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || ||||| ||||||||||| ||| | ||| | || || ||||| Sbjct 75559 TGAAGGGTAGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTCCCATCCTCCAATTGC 75500 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | || || | ||| || || |||||||| ||||| || |||||| Sbjct 75499 TTTCCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATTTTA 75440 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || | || || || | ||||| || || || ||| Sbjct 75439 GCCTTGACATTGTCAATGGTGTCTGAGCTCTCAACCTCCAGAGTAATAGTCTTCCCAGTC 75380 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| ||||| Sbjct 75379 AAGGTCTTGACGAAAATCTGCAT 75357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357051113032670