Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq865 123 2e-23 seq810 120 3e-22 seq1099 105 6e-18 seq1663 89.7 5e-13 seq909 86.0 6e-12 >seq865 Length=406355 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || || | ||||||||| | |||||||| ||||| ||||||||||| | | || | Sbjct 5884 AAACGAAGCACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTC 5943 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || ||||| ||||| || |||||| | |||||| || || || ||||| ||| Sbjct 5944 CCATCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCC 6003 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 |||||| ||| || ||||| | || | |||||| | |||||| || || | ||| Sbjct 6004 TTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAAGGTA 6063 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || ||||| |||| || || || ||||||||||| Sbjct 6064 ATAGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 6101 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| |||||||| ||| |||||| ||| || || ||||| ||| Sbjct 5677 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATCCTCAAGTTGTTTCCCA 5736 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || || || || |||||||||||| ||| ||| ||| Sbjct 5737 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTC 5796 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||||| ||||| || || | ||| | || || || |||| || Sbjct 5797 ACATTATCAATCGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTACCAGTCAAGGTC 5856 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 5857 TTCACAAAAATCTGCAT 5873 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | |||||||| || || || ||||| || || Sbjct 6103 CCACCACGAAGACGGAGAACCAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 6162 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || || | ||||| | |||||| || || || Sbjct 6163 AAAGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGG 6222 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| || || ||||| | || | |||||| | |||||| || Sbjct 6223 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACC 6282 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| ||||| || ||||||||||| Sbjct 6283 TCCAAGGTAATAGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 6329 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || || | ||||| ||| | || || || || || || ||||| || ||| || || Sbjct 6340 AAACGGAGCACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGG 6399 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || ||||| ||||| || ||||||| | |||||| || || || || || ||| Sbjct 6400 CCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCC 6459 Query 127016 TTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 || || |||||| ||| | ||||| | | ||||| | ||||| || || | ||| Sbjct 6460 TTATCTTGGATTTTGGCCTTTACGTTGT-CAATAGTGTCGGAGCTCTCCACCTCCAAGGT 6518 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || || ||||| || |||||||||||||| Sbjct 6519 GATGGTCTTTCCTGTAAGAGTCTTAACAAAAATCTGCAT 6557 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| | | || || ||| || || || ||||| Sbjct 6817 GTTGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCAAGTTGCTTTCCG 6876 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 ||| |||| | || ||||| || || || ||||||||||| | | ||| ||| || ||| Sbjct 6877 GCGAAGATAAGTCTTTGCTGGTCTGGGGGAATGCCCTCCTTAT-CTTGAATTTTTGCCTT 6935 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || |||| || | |||||| | || || || |||| ||| | || || || || |||| Sbjct 6936 GACGTTG-TCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTCCCTGTTAGAG 6994 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || ||||| |||||||| Sbjct 6995 TCTTCACAAAGATCTGCAT 7013 >seq810 Length=562993 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | | || || ||| || ||||||||||| Sbjct 115792 GTTGACTCCTTCTGGATGTTGTAATCGGCAAGAGTTCGGCCATCCTCGAGCTGTTTTCCG 115851 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| | ||||| || || || || |||||||| || |||||| |||| Sbjct 115852 GCGAAGATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATTTTAGCCTTG 115911 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||| | ||| |||||||||| ||| | ||||| || || || || Sbjct 115912 ACGTTG-TCAATGGTGTCGGAACTTTCGACTTCGAGGGTGATGGTTTTTCCAGTGAGGGT 115970 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || || |||||||| Sbjct 115971 TTTCACGAAGATCTGCAT 115988 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| |||||||| ||| || || ||| || || || || ||| Sbjct 114880 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACGCCCATCCTCAAGTTGCTTCCCA 114939 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||||| |||||| || || || || |||||||||||| ||| || ||| Sbjct 114940 GCAAAGATCAATCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTA 114999 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || || | ||||| || || | ||| | || || ||||||| || Sbjct 115000 ACATTATCAATCGTATCAGAGCTCTCCACCTCTAGGGTGATGGTCTTTCCGGTCAAGGTC 115059 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 115060 TTCACAAAAATCTGCAT 115076 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || || | ||||| || | |||||||| || || || ||||| || ||| || || Sbjct 115315 AAACGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGG 115374 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || || || || || ||| | ||||| | |||||| || || || || |||||| Sbjct 115375 CCATCCTCAAGTTGCTTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCC 115434 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 || ||| ||| ||| ||| |||| | || | |||||| | ||||| || || | ||| Sbjct 115435 TTATCC-TGAATTTTTGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCTAAGGT 115493 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || ||||| || || || |||||||||||||| Sbjct 115494 GATGGTCTTTCCGGTGAGGGTCTTGACAAAAATCTGCAT 115532 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||||||||||| || ||||||||||| | | || | ||| || Sbjct 115096 ACCAAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCGCAAGAGTCCTCCCATCCTCC 115155 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || ||| | ||||| | |||||| || || || |||||||||||||| Sbjct 115156 AGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGA 115215 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || ||| ||| | | |||| |||||| | ||||| || || | || | || || Sbjct 115216 ATCTTCGCCTTAACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAACGTGATGGTCTTT 115275 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || || || ||||||||||| Sbjct 115276 CCCGTCAAGGTCTTGACGAAAATCTGCAT 115304 >seq1099 Length=206994 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || ||| | ||| | ||| | || ||||| || || || |||||||| | Sbjct 75356 TCCACCCCTTAGTCGAAGCACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCTGC 75297 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || ||||| |||||||| | ||||| | ||||||||| || || Sbjct 75296 AAGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAATATCAACCTCTGCTGATCTGGGGG 75237 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||| | | || | ||||| | ||||| || Sbjct 75236 AATCCCCTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATTGTGTCTGAGCTCTCAAC 75177 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||| ||| || ||||| |||||||| Sbjct 75176 CTCCAGAGTAATAGTCTTCCCAGTCAAAGTCTTGACAAATATCTGCAT 75129 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| ||||| || |||||||| | | || | ||| || | || |||||| Sbjct 75553 GTAGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTCCCATCCTCCAATTGCTTTCCA 75494 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| || | ||||||||| || || || |||||||| ||| ||||| |||| Sbjct 75493 GCAAAGATTAACCTCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATTTTAGCCTTG 75434 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||||| || || | || | || || || |||| || Sbjct 75433 ACATTGTCAATGGTGTCTGAGCTCTCAACCTCCAGAGTAATAGTCTTCCCAGTCAAGGTC 75374 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 75373 TTGACGAAAATCTGCAT 75357 >seq1663 Length=237253 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| | | ||||| || || ||||||||||| Sbjct 10407 GTAGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCG 10348 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || ||||| |||||||| ||| || || Sbjct 10347 GCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTC 10288 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | || || || | ||| | ||||| ||||| || ||| Sbjct 10287 ACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTT 10228 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 10227 TTCACGAAGATCTGCAT 10211 >seq909 Length=350832 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || ||||| || ||||||||| | | || || || || ||||||||||| Sbjct 176306 GTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGTTTTCCG 176365 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || ||||| || || || ||||| |||||||| ||| || ||| Sbjct 176366 GCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTG 176425 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | || || || | ||| | ||||| || || || ||| Sbjct 176426 ACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTTAGGGTT 176485 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 176486 TTCACGAAAATCTGCAT 176502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475035629454880