Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq865 123 2e-23
seq810 120 3e-22
seq1099 105 6e-18
seq1663 89.7 5e-13
seq909 86.0 6e-12
>seq865
Length=406355
Score = 123 bits (136), Expect = 2e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955
|| || | ||||||||| | |||||||| ||||| ||||||||||| | | || |
Sbjct 5884 AAACGAAGCACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTC 5943
Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015
||| || ||||| ||||| || |||||| | |||||| || || || ||||| |||
Sbjct 5944 CCATCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCC 6003
Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075
|||||| ||| || ||||| | || | |||||| | |||||| || || | |||
Sbjct 6004 TTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAAGGTA 6063
Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || ||||| |||| || || || |||||||||||
Sbjct 6064 ATAGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 6101
Score = 122 bits (134), Expect = 8e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| |||||||| ||| |||||| ||| || || ||||| |||
Sbjct 5677 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATCCTCAAGTTGTTTCCCA 5736
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| ||||||| | |||||| || || || || |||||||||||| ||| ||| |||
Sbjct 5737 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTC 5796
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | ||||||| ||||| || || | ||| | || || || |||| ||
Sbjct 5797 ACATTATCAATCGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTACCAGTCAAGGTC 5856
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||||||||||||
Sbjct 5857 TTCACAAAAATCTGCAT 5873
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||| ||| | |||||||| || || || ||||| || ||
Sbjct 6103 CCACCACGAAGACGGAGAACCAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 6162
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || ||||| || || || | ||||| | |||||| || || ||
Sbjct 6163 AAAGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGG 6222
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| |||||||| || || ||||| | || | |||||| | |||||| ||
Sbjct 6223 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACC 6282
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || ||||| |||| ||||| || |||||||||||
Sbjct 6283 TCCAAGGTAATAGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 6329
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955
|| || | ||||| ||| | || || || || || || ||||| || ||| || ||
Sbjct 6340 AAACGGAGCACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGG 6399
Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015
||| || ||||| ||||| || ||||||| | |||||| || || || || || |||
Sbjct 6400 CCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCC 6459
Query 127016 TTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074
|| || |||||| ||| | ||||| | | ||||| | ||||| || || | |||
Sbjct 6460 TTATCTTGGATTTTGGCCTTTACGTTGT-CAATAGTGTCGGAGCTCTCCACCTCCAAGGT 6518
Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || || || || ||||| || ||||||||||||||
Sbjct 6519 GATGGTCTTTCCTGTAAGAGTCTTAACAAAAATCTGCAT 6557
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || || || || ||||| ||| | | || || ||| || || || |||||
Sbjct 6817 GTTGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCAAGTTGCTTTCCG 6876
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035
||| |||| | || ||||| || || || ||||||||||| | | ||| ||| || |||
Sbjct 6877 GCGAAGATAAGTCTTTGCTGGTCTGGGGGAATGCCCTCCTTAT-CTTGAATTTTTGCCTT 6935
Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
|| |||| || | |||||| | || || || |||| ||| | || || || || ||||
Sbjct 6936 GACGTTG-TCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTCCCTGTTAGAG 6994
Query 127095 TTTTTACAAAAATCTGCAT 127113
| || ||||| ||||||||
Sbjct 6995 TCTTCACAAAGATCTGCAT 7013
>seq810
Length=562993
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||||||| | | || || ||| || |||||||||||
Sbjct 115792 GTTGACTCCTTCTGGATGTTGTAATCGGCAAGAGTTCGGCCATCCTCGAGCTGTTTTCCG 115851
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| | ||||| || || || || |||||||| || |||||| ||||
Sbjct 115852 GCGAAGATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATTTTAGCCTTG 115911
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| || | |||||| | ||| |||||||||| ||| | ||||| || || || ||
Sbjct 115912 ACGTTG-TCAATGGTGTCGGAACTTTCGACTTCGAGGGTGATGGTTTTTCCAGTGAGGGT 115970
Query 127096 TTTTACAAAAATCTGCAT 127113
||| || || ||||||||
Sbjct 115971 TTTCACGAAGATCTGCAT 115988
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| |||||||| ||| || || ||| || || || || |||
Sbjct 114880 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACGCCCATCCTCAAGTTGCTTCCCA 114939
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| ||||||||| |||||| || || || || |||||||||||| ||| || |||
Sbjct 114940 GCAAAGATCAATCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTA 114999
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | || || | ||||| || || | ||| | || || ||||||| ||
Sbjct 115000 ACATTATCAATCGTATCAGAGCTCTCCACCTCTAGGGTGATGGTCTTTCCGGTCAAGGTC 115059
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||||||||||||
Sbjct 115060 TTCACAAAAATCTGCAT 115076
Score = 104 bits (114), Expect = 2e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955
|| || | ||||| || | |||||||| || || || ||||| || ||| || ||
Sbjct 115315 AAACGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGG 115374
Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015
||| || || || || || ||| | ||||| | |||||| || || || || ||||||
Sbjct 115375 CCATCCTCAAGTTGCTTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCC 115434
Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074
|| ||| ||| ||| ||| |||| | || | |||||| | ||||| || || | |||
Sbjct 115435 TTATCC-TGAATTTTTGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCTAAGGT 115493
Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || || ||||| || || || ||||||||||||||
Sbjct 115494 GATGGTCTTTCCGGTGAGGGTCTTGACAAAAATCTGCAT 115532
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | ||||||||||| || ||||||||||| | | || | ||| ||
Sbjct 115096 ACCAAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCGCAAGAGTCCTCCCATCCTCC 115155
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
||||| || || ||| | ||||| | |||||| || || || ||||||||||||||
Sbjct 115156 AGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGA 115215
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| ||| ||| | | |||| |||||| | ||||| || || | || | || ||
Sbjct 115216 ATCTTCGCCTTAACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAACGTGATGGTCTTT 115275
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||| || || || |||||||||||
Sbjct 115276 CCCGTCAAGGTCTTGACGAAAATCTGCAT 115304
>seq1099
Length=206994
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| | || ||| | ||| | ||| | || ||||| || || || |||||||| |
Sbjct 75356 TCCACCCCTTAGTCGAAGCACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCTGC 75297
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| ||||| ||| || ||||| |||||||| | ||||| | ||||||||| || ||
Sbjct 75296 AAGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAATATCAACCTCTGCTGATCTGGGGG 75237
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || || ||| | | || | ||||| | ||||| ||
Sbjct 75236 AATCCCCTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATTGTGTCTGAGCTCTCAAC 75177
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || || |||| ||| || ||||| ||||||||
Sbjct 75176 CTCCAGAGTAATAGTCTTCCCAGTCAAAGTCTTGACAAATATCTGCAT 75129
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| ||||| || |||||||| | | || | ||| || | || ||||||
Sbjct 75553 GTAGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTCCCATCCTCCAATTGCTTTCCA 75494
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| || | ||||||||| || || || |||||||| ||| ||||| ||||
Sbjct 75493 GCAAAGATTAACCTCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATTTTAGCCTTG 75434
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | |||||| | ||||| || || | || | || || || |||| ||
Sbjct 75433 ACATTGTCAATGGTGTCTGAGCTCTCAACCTCCAGAGTAATAGTCTTCCCAGTCAAGGTC 75374
Query 127097 TTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 75373 TTGACGAAAATCTGCAT 75357
>seq1663
Length=237253
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || ||||| ||| | | ||||| || || |||||||||||
Sbjct 10407 GTAGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCG 10348
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| || || || ||||| |||||||| ||| || ||
Sbjct 10347 GCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTC 10288
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||| | || || || | ||| | ||||| ||||| || |||
Sbjct 10287 ACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTT 10228
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 10227 TTCACGAAGATCTGCAT 10211
>seq909
Length=350832
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || ||||| || ||||||||| | | || || || || |||||||||||
Sbjct 176306 GTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGTTTTCCG 176365
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | || ||||| || || || ||||| |||||||| ||| || |||
Sbjct 176366 GCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTG 176425
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||| || | || || || | ||| | ||||| || || || |||
Sbjct 176426 ACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTTAGGGTT 176485
Query 127097 TTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 176486 TTCACGAAAATCTGCAT 176502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475035629454880
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