Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq865 122 8e-23 seq37 122 8e-23 seq1435 118 1e-21 seq1099 114 1e-20 seq810 113 4e-20 seq909 111 1e-19 seq20 95.1 1e-14 seq329 91.5 1e-13 >seq865 Length=406355 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || ||||||||||| ||||| || || ||| | |||| ||| || Sbjct 6804 CACAAGGTGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCATCTTC 6863 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| ||||| ||| | || | || ||||||||| || |||||||| || |||||||| Sbjct 6864 AAGTTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATGCCCTCCTTATCTTG 6923 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| |||| || | || | ||||||||| || || ||||| || | || | Sbjct 6924 AATTTTTGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCT 6982 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || |||||||| || ||||| || ||||| Sbjct 6983 TCCCTGTTAGAGTCTTCACAAAGATCTGCAT 7013 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || ||||||||||| ||||| || || ||| | |||| ||| || Sbjct 7099 CACAAGGTGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCATCTTC 7158 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| ||||| ||| | || | || ||||||||| || |||||||| || |||||||| Sbjct 7159 AAGTTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATGCCCTCCTTATCTTG 7218 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGA 45283 ||||||| |||| || | || | |||||| || Sbjct 7219 AATTTTTGCCTTGA-CGTTGTCAATGGTGTCTGA 7251 Score = 89.7 bits (98), Expect = 5e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 45194 TTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAAT 45253 ||| ||||| ||| | || | || ||||||||| || |||||||| || ||||||||||| Sbjct 7259 TTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGAAT 7318 Query 45254 TTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGC 45312 |||| |||| || | || | |||||| || ||||| || || |||| || || | Sbjct 7319 TTTTGCCTTGA-CGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATTGTCTTCC 7377 Query 45313 CGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| || || || ||||| Sbjct 7378 CTGTAAGGGTTTTCACGAAGATCTGCAT 7405 >seq37 Length=1785839 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || || ||| | ||| | ||| ||||| ||| Sbjct 885904 TGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTTCCATCTTCCAACTGT 885845 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | ||||| |||||||| || ||||||||||| ||||| || || Sbjct 885844 TTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCTTGGATCTTG 885785 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | |||||||| || || ||||| || || | ||||| ||||| Sbjct 885784 GCTTTGA-CGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGGGTTATGGTTTTTCCGGT 885726 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || || || ||||| Sbjct 885725 TAGGGTTTTGACGAAGATCTGCAT 885702 >seq1435 Length=543809 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| || || || |||||| || ||| | ||| || ||||| Sbjct 91929 TGAAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGTGTTCTTCCATCCTCTAATTGC 91870 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| |||||||||||||| || || || ||||| ||||| || || Sbjct 91869 TTCCCGGCGAAGATCAGGCGTTGCTGGTCCGGTGGGATTCCCTCTTTGTCTTGGATCTTG 91810 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | || ||||| || || ||||| || || | ||||| || || Sbjct 91809 GCTTTGA-CGTTGTCGATTGTATCGGAGGATTCCACTTCTAGGGTTATGGTTTTCCCAGT 91751 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || ||||||||||| Sbjct 91750 TAGGGTTTTCACGAAAATTTGCAT 91727 >seq1099 Length=206994 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || ||||| ||||| ||||| || ||||| || ||| ||| || Sbjct 75110 CACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCGAGGGTACGTCCATCCTC 75051 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| ||||| || | |||| ||||||||||| || ||||| || ||||||||||| Sbjct 75050 AAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTATCTTG 74991 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | | || || | | | | || | ||||||||| ||| || || ||||| | |||| Sbjct 74990 GA-TCTTGGTCTTAACATTGTCAATAGTGTCGGAACTCTCAACCTCCAGAGTTATAGTTT 74932 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| ||||| || || || ||||||||| Sbjct 74931 TTCCGGTAAGAGTCTTGACGAAGATTTGCATC 74900 >seq810 Length=562993 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || || ||||| ||||| ||||| || |||||| Sbjct 115759 ATACCTCCCCTGAGACGGAGGACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAATCG 115818 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | |||||||| ||| | |||| | ||||||||| || Sbjct 115819 GCAAGAGTTCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGG 115878 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || |||||||| ||||| |||| || | || | |||||||||| || Sbjct 115879 GGAATACCCTCCTTATCTTGGATTTTAGCCTTGA-CGTTGTCAATGGTGTCGGAACTTTC 115937 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| || | ||||| || || || ||||| || || || ||||| Sbjct 115938 GACTTCGAGGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATCTGCAT 115988 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 |||||||| | || | | ||| || || || ||||| ||||| ||||| || ||||| Sbjct 115987 ATTCCTCCCCTAAGACGGAGCACAAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCA 116046 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | ||| || || | ||||| || ||| | |||| || ||||||||| || Sbjct 116047 GCT-AGGGTACGGCCGTCCTCAAGCTGTTTCCCGGCGAAGATCAGTCTTTGCTGGTCTGG 116105 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 || || || || ||||||||||| || |||| || | |||||| || || Sbjct 116106 GGGGATCCCCTCCTTATCTTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTTTC 116165 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| || || | || || ||||| || ||||| ||||| ||||||||| Sbjct 116166 GACTTCAAGGGTGATTGTCTTTCCGGTGAGGGTTTTCACAAAGATTTGCATC 116217 >seq909 Length=350832 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||||||||||||||| || |||||| | |||| || || Sbjct 176294 ACCAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCA 176353 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||| ||| | || | ||||||||||| || || |||||||| || ||||| Sbjct 176354 AGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGG 176413 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | ||| ||||| || || || || || || | ||||| Sbjct 176414 ATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTC 176473 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || ||||| ||||| Sbjct 176474 CCAGTTAGGGTTTTCACGAAAATCTGCAT 176502 >seq20 Length=1286389 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || ||||||||||| ||||| || || ||| | |||| || || Sbjct 250546 CACCAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTC 250487 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || ||||| ||| | || | || |||||||| || || |||||||| |||||||| Sbjct 250486 AAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTG 250427 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | ||| ||||| || || || || || || | ||||| Sbjct 250426 GATCTTGGCCTTGACATTGTCAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTT 250367 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || ||||| ||||| Sbjct 250366 CCCCGTTAGGGTTTTCACGAAAATCTGCAT 250337 >seq329 Length=298387 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||||| || || |||||||| |||||||| || | ||| || ||| || || || Sbjct 180288 ATGCAGAGTAGACTCCTTTTGAATATTATAGTCTGCAAGAGTTCTACCATCCTCTAACTG 180229 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | || | || ||| || || || | ||| ||||||||||| ||||| || Sbjct 180228 TTTCCCAGCAAAGATGAGTCTTTGTTGATCAGGTGCAATACCTTCTTTATCGTGAATCTT 180169 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | ||| | ||||| |||| || || || ||||||| || || || || Sbjct 180168 GGTCTTAACATTTTCAATCGTGTCAGAAGTTTCAACCTCAAGAGTAATGGTCTTACCAGT 180109 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| || |||||| Sbjct 180108 AAGGGTCTTAACAAAGATCTGCATC 180084 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| || |||||||||||||| || || ||||| | |||| | ||| || Sbjct 180065 ACTAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCAAGGGTTCTTCCATCCTCG 180006 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||| || || | || | | || || || || ||||| |||||||| ||||| Sbjct 180005 AGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGG 179946 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 | | || || | | | | || | || || ||| ||| ||||| ||||| | ||||| Sbjct 179945 A-TCTTGGTCTTAACATTGTCAATTGTATCAGAACTCTCTACTTCTAGAGTGATTGTTTT 179887 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || ||||| ||||||||| Sbjct 179886 CCCTGTAAGTGTCTTCACAAAGATTTGCATC 179856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||| || ||||||||||| | ||| | ||| ||| Sbjct 180521 ACAAGATGAAGAGTAGACTCCTTCTGAATATTATAATCTGCCAAAGTTCTCCCATCCTCC 180462 Query 45192 AATTGTTTTCCTGCGTATATCAATCGT-TGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || | || |||| | ||||| || || || || || |||||||| || Sbjct 180461 AATTGCTTCCCAGCAAAGAT-AATCCTCTGCTGATCTGGTGGGATACCCTCTTTATCCTG 180403 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || | || || | | | | || | || || ||| || ||||| | ||||| ||| | Sbjct 180402 AA-TCTTAGTCTTAACATTATCAATTGTATCTGAACTTTCCACTTCCAAAGTAATCGTCT 180344 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || || || ||||| ||||||||| Sbjct 180343 TTCCAGTAAGTGTCTTCACAAAGATTTGCATC 180312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451561016569520