Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq865 116 4e-21 seq810 114 1e-20 seq20 113 5e-20 seq1663 107 2e-18 seq909 100 3e-16 >seq865 Length=406355 Score = 116 bits (128), Expect = 4e-21 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||| | ||| || || | ||| ||| || ||||| |||||||||| Sbjct 7405 TGCCTCCCCTGAGACGGAGCACAAGGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCGG 7464 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||| || || |||| |||||||| || |||||||| |||| | ||||||||| | | Sbjct 7465 CTAGGGTACGGCCGTCCTCGAGCTGTTTCCCGGCGAAGATCAGCCTCTGCTGGTCTGGGG 7524 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCG---CTCGAT 46540 | | | |||||| || |||||| |||| ||| | | | |||||| ||| Sbjct 7525 GAATACCCTCCTTATCTTGGATCTTAGCTTTGA-CGTTGTCGATTGTGTCGGAACTC--- 7580 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 7581 TCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 7633 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || ||||| | ||||| ||| | ||| |||||||||||||||||| || | Sbjct 5875 CCTCCCCTCAAACGAAGCACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 5934 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | | || || |||||||| || || || |||| | ||||||||| | || Sbjct 5935 AGAGTCCTCCCATCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 5994 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||||||||| |||||| ||||| | | | ||||| ||| || Sbjct 5995 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTC---TCA 6051 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || || ||||| |||| || || || || || ||||| Sbjct 6052 ACCTCCAAGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 6101 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | ||| |||||| ||||| |||||||| | | ||| || | || || Sbjct 6121 ACCAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCA 6180 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || ||||| | ||||||||| | || | || |||||||| Sbjct 6181 AGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGA 6240 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||||| | | | ||||| ||| || || |||| || || || Sbjct 6241 ATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTC---TCAACCTCCAAGGTAATAGTC 6297 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| ||||| || || || ||||| Sbjct 6298 TTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 6329 >seq810 Length=562993 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || ||||| | |||| || | ||| ||| || ||||||||||| || | Sbjct 115078 CCTCCCCTCAAACGAAGAACCAAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCGCA 115137 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | | || || ||||||||||||||||| ||||| | ||||||||| | || Sbjct 115138 AGAGTCCTCCCATCCTCCAGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGA 115197 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||||||||| |||||| ||| | | | | ||||| |||| || Sbjct 115198 ATGCCCTCCTTGTCTTGAATCTTCGCCTTAACATTGTCGATGGTGTCTGAGCTC---TCA 115254 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||||||| || ||||||| || || || || || ||||| Sbjct 115255 ACCTCCAACGTGATGGTCTTTCCCGTCAAGGTCTTGACGAAAATCTGCAT 115304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| ||||| || | || |||||||| || |||||||| Sbjct 115797 CTCCTTCTGGATGTTGTAATCGGCAAGAGTTCGGCCATCCTCGAGCTGTTTTCCGGCGAA 115856 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||||| | || | | |||||| || ||| || ||||| ||| Sbjct 115857 GATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATTTTAGCCTTGA-CGT 115915 Query 46522 CGCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | || | ||||| ||| || || | ||||||||||| || || || ||||| | Sbjct 115916 TGTCAATGGTGTCGGAACTTTCGACTTCGAGGGTGATGGTTTTTCCAGTGAGGGTTTTCA 115975 Query 46581 CAAAGATTTGCATT 46594 | ||||| |||||| Sbjct 115976 CGAAGATCTGCATT 115989 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||| | ||| || || | || |||||| ||||| ||||| || | | Sbjct 115990 CCTCCCCTAAGACGGAGCACAAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCT 116049 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || ||||| || |||||||| |||| | |||||||| | || Sbjct 116050 AGGGTACGGCCGTCCTCAAGCTGTTTCCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGG 116109 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | |||||| || ||||| ||||| | | | ||||| ||| ||| Sbjct 116110 ATCCCCTCCTTATCTTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCT---TTCG 116166 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| || || || || || ||||| |||||||||||||| Sbjct 116167 ACTTCAAGGGTGATTGTCTTTCCGGTGAGGGTTTTCACAAAGATTTGCAT 116216 >seq20 Length=1286389 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||| | |||||| || | || ||||| ||||| |||||||||| | Sbjct 250563 CCACCCCTAAGACGAAGCACCAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCT 250504 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || |||||||| |||||||| || | ||||||||||| | || Sbjct 250503 AGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGG 250444 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| || |||||| ||||| | | | || ||| ||||| || Sbjct 250443 ATGCCTTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATGGTATCGGAGGATTCAACC 250384 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | || |||||||| ||||| || ||||| || || || |||||||| Sbjct 250383 TCTAGGGTTATGGTTTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTT 250334 >seq1663 Length=237253 Score = 107 bits (118), Expect = 2e-18 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| || ||||| || |||||||| Sbjct 10402 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCGGCGAA 10343 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGC 46519 || | ||||||||||| | || | || |||||||| |||||| ||| | Sbjct 10342 GATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATT 10283 Query 46520 GTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 |||| | ||||| ||||| || || | || |||||||| || || || ||||| Sbjct 10282 GTCG--ATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTC 10225 Query 46580 ACAAAGATTTGCATTTT 46596 || ||||| |||||||| Sbjct 10224 ACGAAGATCTGCATTTT 10208 >seq909 Length=350832 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||| | ||||| || | ||| ||||||||||| ||||| |||| | Sbjct 176276 CCACCCCTAAGACGAAGAACCAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGCT 176335 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || ||||| || |||||||| || | || |||||||| | || Sbjct 176336 AGGGTTCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGGG 176395 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| |||||| |||| | | | || ||| ||||| || Sbjct 176396 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCAACC 176455 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | || |||||||| || || || ||||| || || || |||||||| Sbjct 176456 TCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATTTT 176505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564685441404240